Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71680 142 / 1e-36 Transmembrane amino acid transporter family protein (.1) AT1G67640 130 / 9e-33 Transmembrane amino acid transporter family protein (.1) AT5G40780 128 / 6e-32 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 127 / 1e-31 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 121 / 1e-29 Transmembrane amino acid transporter family protein (.1) AT1G25530 107 / 9e-25 Transmembrane amino acid transporter family protein (.1) AT3G01760 103 / 2e-23 Transmembrane amino acid transporter family protein (.1) AT1G61270 102 / 3e-23 Transmembrane amino acid transporter family protein (.1) AT1G47670 59 / 8e-09 Transmembrane amino acid transporter family protein (.1) AT5G49630 52 / 1e-06 AAP6 amino acid permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037054 [exp] 431 / 1e-144 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10037052 [exp] 200 / 2e-60 AT1G71680 215 / 1e-75 Transmembrane amino acid transporter family protein (.1) Lus10008263 [exp] 166 / 1e-44 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 130 / 2e-32 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 129 / 2e-32 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 127 / 1e-31 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 126 / 5e-31 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 120 / 5e-29 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 117 / 3e-28 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179000 [exp] 137 / 3e-35 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335200 [exp] 127 / 9e-32 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 127 / 2e-31 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 125 / 7e-31 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G118000 [exp] 113 / 8e-27 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G055800 [exp] 111 / 4e-26 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 109 / 1e-25 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 59 / 7e-09 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 50 / 4e-06 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.013G103551 [exp] 49 / 6e-06 AT1G10010 353 / 2e-119 amino acid permease 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10036933 pacid=23171069 polypeptide=Lus10036933 locus=Lus10036933.g ID=Lus10036933.BGIv1.0 annot-version=v1.0 ATGGGTGACTCAGCTGCTTGTCTCATGAGATCATTCTCCCACCCCTCTAATTCCATCCGCGAATCTCAAGAGGAATCATTGGATCTACCAAGAAACAAAA GGCGGAAGAGTTCTGCTTTGTCAGCGGCTCGTAGCGAAACAACAACATCAGGAATGTCAGAGTCTGCTGCTTATGATAAACAAACTGCAACAGTTGTGTC CCCTAAGCTCGAAATGGACTATTCACCTAATATCGAAAGAGTTGCCACAGAATCTGAAGTTGGAATTGATGAGGAGCAAATGCAGGTGGACAATGTTGGT GATACAATCAGAGAAGGAACTCCAATCAAGGAATCAAGGGATTTACAAACTAACAAAAGGCGAAAGAATTCTGCTTCATCAACGGCTCGTAGCAGCAAAA CAACAACAACAAAAACATCAGGAATGTCAAAGTCAGCTTCTGCTGATAAACAGACTGCAATAGCTGTGTCCCCGGAGCTCGAAATGGACTATTCGCCTAA TCTTGAAACAGTTGTGACAGAATCTGAAGTTGATATCGCAACTCCAATCAAGGAATCAATGGATTTACAAAGTAACAAAAGGCGAAAGAGTTCTGCTTTG TCAGCAGGTCGTACTAAACAGACTGCTGCAACTTCATCCTCTCGGACAAAAGTTGGAATCGAGAAGAAGGTTGCAGAGGACACACCGGTATACAGAAAGA GATTAGCTCCGAAGGCTGTCCATATATCTATCAACTTTGCTTCTAGGCTATGGGAAACTGGTAAAAGTTCTCTAAGGAAGTCTAAAGAGCATGGAACTGG TCTCAAGAGTGCTGCAGTAACCAAGGGATCTGTTCAAGGCGAATTAAAGATTCACGCTTCAGTGGCTGCAATCAAGGCGTCTGTTCATGGCAAATCAGAG ATTCGCTCTTCTATGGCTGTAACCAAGAAATCTGTTCAAGCGGAACCAAAGATTCGTGCTTCTGTGGCTGCTGCAACCAAGGCATCTGTTCAAGGCAAAT CAAAGATTCGTGCTTCGATGGCTGCTGGCCAAGTGCATGACAAAAGGACTGCCGGATCGATAGCCATAGTGATGTCCTGGATGATCACATTCTACTCACT CTGGCTAATGGTCGAGATGCGCGAGCTAGTCCCGGGGAAACGTTTCGATCGATACCACAAACTAGGCCAGCACGCATTCGGCGACTGGAGAGGCTACCGG ATAGTGTTCCCTCAACAACTCATCGTCCAAGTCGCCTCGGACATTGTGTACATGGGCACCGGTGGGAAATCACTCAAAAAATTCTTCGAACTCGCCATGC CCGAAATCGGAGACCACAGGAAGACTTACTTCATCTTAGCTTCCTGCATCGTCCAACTAATCCTCTCCCAAGATAGTCTCCTTACTAGCGGCCCTCATGT CCGGATCGTACTCGATGCTCACATTCGTGACATCGACCATCAAGGGTGTCAACAATGTTCGTGCGCTTCAGGGTATTGGGCGTTTGGTAATACGGTTGAG GATGACGTCCTAGTCTCGCTCCAGCATCCGAATTGGCTTATAGCTGTTGCCAATTTCTTGGTGTTTGTTCACGTCTATCAGGTTTTTGCTATGCCTGTGT TTGATTTTATGGAGGGCATTTTGGTCCGTAGGTGGAAATTTGTTCCGGGGTGA
AA sequence Show only first row Show all	>Lus10036933 pacid=23171069 polypeptide=Lus10036933 locus=Lus10036933.g ID=Lus10036933.BGIv1.0 annot-version=v1.0 MGDSAACLMRSFSHPSNSIRESQEESLDLPRNKRRKSSALSAARSETTTSGMSESAAYDKQTATVVSPKLEMDYSPNIERVATESEVGIDEEQMQVDNVG DTIREGTPIKESRDLQTNKRRKNSASSTARSSKTTTTKTSGMSKSASADKQTAIAVSPELEMDYSPNLETVVTESEVDIATPIKESMDLQSNKRRKSSAL SAGRTKQTAATSSSRTKVGIEKKVAEDTPVYRKRLAPKAVHISINFASRLWETGKSSLRKSKEHGTGLKSAAVTKGSVQGELKIHASVAAIKASVHGKSE IRSSMAVTKKSVQAEPKIRASVAAATKASVQGKSKIRASMAAGQVHDKRTAGSIAIVMSWMITFYSLWLMVEMRELVPGKRFDRYHKLGQHAFGDWRGYR IVFPQQLIVQVASDIVYMGTGGKSLKKFFELAMPEIGDHRKTYFILASCIVQLILSQDSLLTSGPHVRIVLDAHIRDIDHQGCQQCSCASGYWAFGNTVE DDVLVSLQHPNWLIAVANFLVFVHVYQVFAMPVFDFMEGILVRRWKFVPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	0	1
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	1.7	0.9779
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	2.8	0.9717
AT3G21620			ERD (early-responsive to dehyd...		Lus10030024 [exp]	3.2	0.9748
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	4.9	0.9718
AT3G15550			unknown protein		Lus10035906 [exp]	5.5	0.9697
AT5G26910			unknown protein		Lus10037725 [exp]	5.7	0.9663
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	6.7	0.9712
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	7.9	0.9657
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	8.1	0.9647
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	8.4	0.9667

Compare expression of checked genes

Lus10036933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.