Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67730 427 / 2e-151 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 308 / 3e-104 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT5G10050 77 / 8e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 74 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 72 / 3e-14 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G65205 72 / 4e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 70 / 1e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 68 / 3e-13 SAG13 senescence-associated gene 13 (.1.2.3) AT1G49670 70 / 4e-13 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G47360 68 / 8e-13 ATHSD3 hydroxysteroid dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006248 [exp] 603 / 0 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10011396 [exp] 306 / 1e-103 AT1G24470 357 / 7e-124 beta-ketoacyl reductase 2 (.1) Lus10006249 [exp] 206 / 9e-66 AT1G67730 212 / 2e-68 beta-ketoacyl reductase 1 (.1) Lus10019683 [exp] 79 / 8e-17 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 79 / 1e-16 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026851 [exp] 75 / 5e-15 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 74 / 7e-15 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 74 / 3e-14 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 71 / 7e-14 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052300 [exp] 497 / 7e-179 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.008G181700 [exp] 483 / 4e-173 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.008G181600 [exp] 357 / 1e-123 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.010G052500 [exp] 354 / 2e-122 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.010G052400 [exp] 305 / 3e-103 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.016G048800 [exp] 76 / 2e-15 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.013G084100 [exp] 73 / 2e-14 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G103000 [exp] 74 / 3e-14 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.010G056100 [exp] 72 / 6e-14 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 72 / 6e-14 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10036940 pacid=23171261 polypeptide=Lus10036940 locus=Lus10036940.g ID=Lus10036940.BGIv1.0 annot-version=v1.0 ATGGAGGCGGCTAACCAGCTCTACAACATCCTCGACACCTTAAAGGTCCAGCCTTTCTACATCCTAGCCCTCTTCACACTCGGAACCCTCACGACCCTCA AGTTCCTCTACTCCCTCCTCTACTGGGTCTACGTCAATTTCTTGCGGCAGGGAAAGAATCTGAAGAAGTACGGATCATGGGCGGTCGTCACCGGCGCCAC CGACGGAATCGGAAAAGGTTTCGCCTTTCAGCTCGCACGCAAGGGTATTAACTTGGTCATCGTGGGGCGGAACCCTAGCAAGCTTAAAGAAGTCTCCGAC TCGATCGGAGCGAAGTACTCTGTCGAAATTAAGACGGTGGTCGTCGACTTTTCCGGCGACATCGACGGCGGGGTGGAGAGGATCAAGGAGACGATTGGAG GGCTGGAAGTTGGAATTCTGATTAACAACGTCGGGGTTTCGTACCCTTACGCTAGGTTCTTCCACGAGGTTGATGAGGAGCTGCTGGGGAATCTGATTAA GGTGAACGTTGAAGGGACGACCAAAGTTACTCAGGCGGTTCTGCCCGTGATGTTGAAGAGGAAGAAGGGGGCTGTTGTGAATATTGGGTCTGGTGCTGCC ATTGTTATCCCTTCTGATCCGCTCTATGCTGTTTATGCTGCTACTAAAGCGTACATTGATCAGTTCTCTAGGTGTTTATATGTTGAGTACAAGAAGAGTG GGATTGATGTTCAGTGTCAGGTTCCACTCTACGTGGCGACAAAGATGGCCTCCATAAAGCGATCATCCTTCTTCGTGCCATCGAACGAGGGCTATGCCGA GGCAGGACTGCGTTGGATAGGTTACGAGCCTCGCTGCACCCCTTACTGGCCACATTCTTTCCTCTGGGCTCTCATCCACACCTTGCCGGAATCAGCAGTC GATGCATGGAGGCTGAAGTTCTGTATGGGGATCCGTAAGCGAGGCCAGCGGAAGGATGCAATGAAGAAAGACGAGTGA
AA sequence Show only first row Show all	>Lus10036940 pacid=23171261 polypeptide=Lus10036940 locus=Lus10036940.g ID=Lus10036940.BGIv1.0 annot-version=v1.0 MEAANQLYNILDTLKVQPFYILALFTLGTLTTLKFLYSLLYWVYVNFLRQGKNLKKYGSWAVVTGATDGIGKGFAFQLARKGINLVIVGRNPSKLKEVSD SIGAKYSVEIKTVVVDFSGDIDGGVERIKETIGGLEVGILINNVGVSYPYARFFHEVDEELLGNLIKVNVEGTTKVTQAVLPVMLKRKKGAVVNIGSGAA IVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSNEGYAEAGLRWIGYEPRCTPYWPHSFLWALIHTLPESAV DAWRLKFCMGIRKRGQRKDAMKKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	0	1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10035438 [exp]	2.4	0.8238
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	3.0	0.7879
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	6.6	0.7916
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039401 [exp]	6.9	0.7530
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	7.3	0.7316
AT4G30630			unknown protein		Lus10026889 [exp]	7.5	0.6849
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	10.8	0.6843
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10005162 [exp]	12.0	0.7274
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	14.0	0.6769
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10000737 [exp]	15.3	0.7410

Compare expression of checked genes

Lus10036940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.