Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 136 / 8e-38 Cupredoxin superfamily protein (.1) AT5G21105 94 / 4e-23 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 91 / 1e-21 Plant L-ascorbate oxidase (.1) AT5G05390 54 / 9e-09 LAC12 laccase 12 (.1) AT1G76160 45 / 8e-06 SKS5 SKU5 similar 5 (.1) AT1G55570 45 / 1e-05 SKS12 SKU5 similar 12 (.1) AT2G46570 44 / 2e-05 LAC6 laccase 6 (.1) AT2G40370 44 / 2e-05 LAC5 laccase 5 (.1) AT5G48100 43 / 4e-05 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT1G21850 42 / 0.0001 SKS8 SKU5 similar 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037103 [exp] 131 / 4e-39 AT4G39830 121 / 2e-32 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 139 / 9e-39 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 139 / 1e-38 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10026753 [exp] 100 / 1e-24 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10025538 [exp] 99 / 2e-24 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10017426 [exp] 55 / 5e-09 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10007532 [exp] 53 / 2e-08 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10009841 [exp] 51 / 8e-08 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10026401 [exp] 51 / 1e-07 AT2G30210 518 / 0.0 laccase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171700 [exp] 154 / 2e-44 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 147 / 4e-42 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 147 / 7e-42 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 147 / 8e-42 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 112 / 3e-29 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.009G159700 [exp] 105 / 7e-27 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 97 / 6e-24 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.010G183500 [exp] 50 / 2e-07 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.004G010100 [exp] 45 / 1e-05 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.007G023300 [exp] 45 / 1e-05 AT5G03260 889 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10036956 pacid=23171009 polypeptide=Lus10036956 locus=Lus10036956.g ID=Lus10036956.BGIv1.0 annot-version=v1.0 ATGCTGAGGCAGGATCACAAGATGACGGTGGGGGAAGCCGACGGGAACTACGTGGAACCATCCGAGACGGAGAACCTCTACGTCTACTCCGGGGAGACCT ACTCCGTGTTGGTGAAAGCCGATCAGCCTCCGACGAGGAATTACTGGATCACCACGAGCGTCGTCTCTCGGAAACCTTCAACTCCGGCACGTATCGCAAT TCTCAACTACTACCCGAACCACTCGCGGCGTTGTCCTCATACTGTCCCGCCAGCTGGACCTCAATGGAACGACACCGTATCACGCCTGGAACGGAGTCAG GCATTTAAGACCCGGAAAGGCTACGTCCACGAACCGCCTCCGACCGGACCGGGTCATCCAGCTACTCAACACGCAGAACAAGATTGGAGCGAAATTCAAA TAGGCGTTGAACAATCTCTCCCTTGCCCTCTCAACGACTCCTTACTTGATCCCCCTGAAGTGAAACCTGAAGGGCATTTTCGATCAGGATTCGCCTCCGG AGAAATTTGA
AA sequence Show only first row Show all	>Lus10036956 pacid=23171009 polypeptide=Lus10036956 locus=Lus10036956.g ID=Lus10036956.BGIv1.0 annot-version=v1.0 MLRQDHKMTVGEADGNYVEPSETENLYVYSGETYSVLVKADQPPTRNYWITTSVVSRKPSTPARIAILNYYPNHSRRCPHTVPPAGPQWNDTVSRLERSQ AFKTRKGYVHEPPPTGPGHPATQHAEQDWSEIQIGVEQSLPCPLNDSLLDPPEVKPEGHFRSGFASGEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10036956 [exp]	0	1
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10032760 [exp]	30.3	0.7146
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	34.1	0.7930
					Lus10012525 [exp]	48.0	0.7845
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	49.0	0.7645
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10014280 [exp]	55.9	0.7784
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	60.6	0.7663
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	92.0	0.6878
AT4G12010			Disease resistance protein (TI...		Lus10017419 [exp]	92.8	0.7247
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	106.3	0.7378
					Lus10024788 [exp]	133.7	0.7271

Compare expression of checked genes

Lus10036956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.