Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 215 / 8e-68 Cupredoxin superfamily protein (.1) AT5G21105 174 / 1e-53 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 166 / 4e-49 Plant L-ascorbate oxidase (.1) AT5G03260 122 / 2e-33 LAC11 laccase 11 (.1) AT5G01190 118 / 9e-32 LAC10 laccase 10 (.1) AT5G07130 118 / 1e-31 LAC13 laccase 13 (.1) AT5G01050 117 / 2e-31 Laccase/Diphenol oxidase family protein (.1) AT1G18140 117 / 3e-31 LAC1, ATLAC1 laccase 1 (.1) AT5G01040 115 / 1e-30 LAC8 laccase 8 (.1) AT2G30210 114 / 2e-30 LAC3 laccase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009603 [exp] 298 / 4e-100 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 287 / 5e-96 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 217 / 2e-68 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 212 / 1e-66 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10026753 [exp] 156 / 2e-45 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10025538 [exp] 152 / 3e-43 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10023189 [exp] 124 / 8e-34 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 124 / 1e-33 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10026512 [exp] 123 / 2e-33 AT5G03260 919 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088358 [exp] 231 / 7e-74 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 229 / 4e-73 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.010G171700 [exp] 228 / 5e-73 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 216 / 4e-68 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 187 / 2e-57 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G219300 [exp] 160 / 5e-47 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G159700 [exp] 157 / 9e-46 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G102700 [exp] 127 / 8e-35 AT5G03260 881 / 0.0 laccase 11 (.1) Potri.007G023300 [exp] 124 / 8e-34 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.004G156400 [exp] 122 / 2e-33 AT5G03260 877 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10036957 pacid=23171243 polypeptide=Lus10036957 locus=Lus10036957.g ID=Lus10036957.BGIv1.0 annot-version=v1.0 ATGTCGGATTATGACATTTACAGTGTGGCGAAGAACGTGAACGCTACGCTGAGCAACCGGATTTACAAGCTGGAATTCAATTCCACGATGGATGTTATGT TACAGAATGCCAACACAATGACGCCTAACAATAGTGAAGCGCACCCTTGGCATCTCCACGGGCATGATTTTTGGGTGCTCGCGTATGGGGAAGGGAACTG TGACCCAACCCGGGATATGGAGAGGTATAACCTTGTGGATCCGGTGATGAAGAATATAGTGCCGCTTCATCCTTATGGGTGGACCGCGATTCGGTTCAGG GCAGATAACCCGGGTCTGTGGTTCTTCCATTGCCACATTGAGTCTCATTTCTTCATGGGAATGGTTTTGGTTTTCCAAGAAGCGAGTTGGATGGTTGGAC GGCTGCCTTCTTCAGTTATGGGATGTGGGAAAACCAAACCGGCCGTTTGA
AA sequence Show only first row Show all	>Lus10036957 pacid=23171243 polypeptide=Lus10036957 locus=Lus10036957.g ID=Lus10036957.BGIv1.0 annot-version=v1.0 MSDYDIYSVAKNVNATLSNRIYKLEFNSTMDVMLQNANTMTPNNSEAHPWHLHGHDFWVLAYGEGNCDPTRDMERYNLVDPVMKNIVPLHPYGWTAIRFR ADNPGLWFFHCHIESHFFMGMVLVFQEASWMVGRLPSSVMGCGKTKPAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10036957 [exp]	0	1
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	23.3	0.8736
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10014480 [exp]	35.4	0.8713
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	39.0	0.8651
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	41.4	0.8642
AT5G05220			unknown protein		Lus10034248 [exp]	45.2	0.8150
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	50.4	0.8592
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	57.2	0.8592
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	67.6	0.8557
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	84.4	0.8499
AT3G61610			Galactose mutarotase-like supe...		Lus10003035 [exp]	94.0	0.8408

Compare expression of checked genes

Lus10036957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.