Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24360 360 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 117 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 116 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 115 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 115 / 5e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 114 / 1e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G04000 111 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 110 / 6e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 109 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 108 / 2e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015821 [exp] 488 / 3e-172 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020265 [exp] 117 / 1e-30 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 113 / 3e-29 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 110 / 4e-28 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 106 / 1e-26 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006698 [exp] 106 / 2e-26 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10016499 [exp] 104 / 9e-26 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 102 / 5e-25 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006699 [exp] 102 / 5e-25 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056100 [exp] 431 / 2e-152 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 429 / 1e-151 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 119 / 1e-31 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 117 / 5e-31 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 110 / 2e-28 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 110 / 3e-28 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 110 / 4e-28 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089700 [exp] 108 / 1e-27 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 107 / 8e-27 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 106 / 9e-27 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10036980 pacid=23171304 polypeptide=Lus10036980 locus=Lus10036980.g ID=Lus10036980.BGIv1.0 annot-version=v1.0 ATGGCTGCTATTACCGGATCCACCGCCGTCGCATTCAAATCCGCCGGGTTCGTCGCTGCCTCCTCCGGCGAAAGGGGCATTAACCAGTTCCGCCACTGGT CTCCTGTTCCCGCCAGCCTCCACTTCTCCCGTGCTGGCCTCCGGTGCAGATCGAGAAGCTCGGTATCCTCTTCCGGTGTGAGAGCTCAGGTTGCTGCAGT TGAACCAGTAAGCAGTGAGTCAGTTAAGAAGGTGGAATCTCCAGTCGTTATTGTAACTGGAGCTTCCAGAGGAATCGGGAAGGCGATTGCATTGTCGTTG GGGAAAGCAGGTTGCAAGGTTCTGGTTAACTATGCAAGGTCATCCAAGGAGGCTGAGGAAGTCTCCAAAGAGATTGAAGCTTCCGGTGGTCAAGCTGTAA CCTTTGGTGGTGATGTCTCTAAAGAAGAGGATGTGGAGGCCATGATGAAAACTGCTATCGATGCTTTTGGAACAGTTGACATACTGATAAACAATGCAGC AAAGGTTGCAGGGATCACAAGGGACACTTTGTTGATGCGGATGAAGAAACAGCAGTGGCAGGATGTTATTGACCTCAATCTCACTGGTGTTTTCCTTTGT ACGCAGGCTGCAGCCAAGATCATGATGAAAAAAAGAAAGGGAAGGATTATCAATATCGCTTCAGTTGTTGGTTTGGTTGGCAACATTGGGCAAGCTAACT ACAGTGCTGCAAAGGCTGGAGTCATTGGCTTCACAAAGAGTGTTGCGAAGGAATATTCAAGCAGAAATATCAACGTCAATGCTGTCGCTCCTGGATTCAT TGCATCTGACATGACTGCCAAGCTTGGGGATGACATTGAAAAGAAAATATTGGAGACAATTCCGTTAGGGCGGTACGGTCAGCCGGAAGAGGTGGCCGGA TTGGTGGAATTCCTTGCTCTGAACCCGGCTGCTGGCTACATGACCGGGCAGGTGCTTACCATCGACGGAGGAATGGTGATGTAA
AA sequence Show only first row Show all	>Lus10036980 pacid=23171304 polypeptide=Lus10036980 locus=Lus10036980.g ID=Lus10036980.BGIv1.0 annot-version=v1.0 MAAITGSTAVAFKSAGFVAASSGERGINQFRHWSPVPASLHFSRAGLRCRSRSSVSSSGVRAQVAAVEPVSSESVKKVESPVVIVTGASRGIGKAIALSL GKAGCKVLVNYARSSKEAEEVSKEIEASGGQAVTFGGDVSKEEDVEAMMKTAIDAFGTVDILINNAAKVAGITRDTLLMRMKKQQWQDVIDLNLTGVFLC TQAAAKIMMKKRKGRIINIASVVGLVGNIGQANYSAAKAGVIGFTKSVAKEYSSRNINVNAVAPGFIASDMTAKLGDDIEKKILETIPLGRYGQPEEVAG LVEFLALNPAAGYMTGQVLTIDGGMVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	0	1
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	3.7	0.9499
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10038863 [exp]	4.0	0.9395
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	4.0	0.9335
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	5.8	0.9430
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010370 [exp]	7.5	0.9401
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10043344 [exp]	8.7	0.9152
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	9.5	0.9233
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	10.1	0.9360
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	12.4	0.9393
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	14.1	0.9182

Compare expression of checked genes

Lus10036980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.