Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44220 219 / 3e-65 Protein of Unknown Function (DUF239) (.1) AT3G13510 212 / 2e-62 Protein of Unknown Function (DUF239) (.1) AT5G18460 211 / 1e-61 Protein of Unknown Function (DUF239) (.1) AT1G55360 207 / 1e-60 Protein of Unknown Function (DUF239) (.1) AT5G56530 203 / 5e-59 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 202 / 1e-58 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 201 / 6e-58 Protein of Unknown Function (DUF239) (.1) AT1G70550 199 / 2e-57 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 198 / 3e-57 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44250 197 / 5e-57 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036998 [exp] 592 / 0 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 457 / 2e-157 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 421 / 8e-144 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 381 / 7e-128 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 371 / 7e-124 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10006859 [exp] 371 / 7e-124 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 360 / 1e-119 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 294 / 8e-95 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 254 / 1e-78 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233000 [exp] 224 / 9e-67 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 223 / 5e-66 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 221 / 8e-66 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 216 / 6e-64 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 210 / 2e-61 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 201 / 2e-57 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 199 / 8e-57 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 194 / 1e-55 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 192 / 2e-54 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 158 / 7e-43 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10036985 pacid=23171255 polypeptide=Lus10036985 locus=Lus10036985.g ID=Lus10036985.BGIv1.0 annot-version=v1.0 ATGCCAAAACTATTTATGTCGATGGGCAGGACTCCGAAGGTTTGCCAACTCCTACATTGTTTCCAGCACCCTCACGATGTGCTTTTGATCGAACATTTGT CTCACCGGTTGGGTAAGCTTGAACCTGGAGACATTGTTCTAGTTCGATCCCCGGTTGAACCGGGAAAGATTGTGGCTAAATGGATAGTCGCAATGGAAGG TGATCGCGTCACTTTCCTTACTGCCCTTCACATTCCGGTTAGACGTTCGATTGTCTTTGCATTGGCGATGACCAATTCTTACAATACTATTGTTAGTTTC AGAGTGATGGCTATTATGTTATTTTTTATGGTTTTCGGTATCGGCGTAAATGGTATGGTTAACAATGATAATATGAAGTTTGATCGTGATGGCATATTAA AAACCATTGTGAGCGGAGACGAAACTATTGATTGTGTGGACATCTATAAACAACCCGCTTTCAACAATCCGCTTTTGAAAAATCACACTCTTCAGTTGAA ACCAAGTTCATACCCGAGGGGGTCGAGATCCAAAGTTGTGGTTAACTCAACAAAGTACATTCAAATGTGGCATAAGAATGGTGAGTATTGCCCCAAGGGA ACAATAGCAATGTTGAGATCGTCAACGACGACTTGGGCATTTAAGGATATCGAGGTGGCGGGAGTGTCGTCGTCTTATGATTACTATGGACTCAATATGG ATATGAGCGTATGGAGCCCACAAACACAACCAAACGAAATGAGCTCATCTCAAGTTTGGGTGTTCGGTGGGGACGGCCTCATAGTGCAGTCGTTTCAAGC TGGTTGGATGAGGGATGCAACCGAAGTATCTGGATGCTACAATCTAGACTGTCCTGGTTTTGTTCAAACAAGTTCTACCATTGTCCTCGGTTCTCAACTA AACCCAGTTTCCATCTATGGCGGCCAACAATTTTTTATCAACCTCAAAATTCACAAAGATTTTAAAACGGGCAACTGGTGGCTAAACATCCAAGGAACGG ATATAGGGTACTGGCCGGGAGATTTATTGCCGAGCATGAAGATATCAGCAACTGTGATGGTGTGGGGAGGTAAAGTTAGCAATACGAAGCCGAAAGGGGT TCACACAAGGACTCAGATGGGGAGCGGCCATTTCCCGAGCGAAGGGTTCGGAAAGGCGGCCTGGTTCAAGAACTTAGAATATGTGGACGACAAAGGATCG TTCCAGGATGTCCGCTTTATTCAAACAACAGCTTCGGATGAAAATTGTTACGACGCACAAGTGCAGGATTGGGATCAGAATTTTGTGCTCCCTAATGTTG AAGCGGTTAAAGTTCTTAATCCACTGGTGACGAGAAATGATAATTACCAGAAGTCTTTTCCACCATTTTCGACAAATCCCAATACCTCGCGCGCACTTTT ACTCCACTGCTCGGATGTGAAAGACGTGCCGTCCGTTGTACCAGTTTCGTATGCGCCTCGTGTGGCGCCCTTGCCGGAGGATAAGGTTGAAGGTGAAGTG CAAGAGAGTGCAAAGGACGGCGAGGACATGAAGACCGAGGTTCGCCGGGTTGAAACGGAGAATAGGGCTATGAGAAGGATTTTGAGGATGGAGGAACAAA CAGAGCAGGCTGTTGTGCCTTTTCCTAGATTGATGGTACCGGAGAAGAAGAAAGAGAAGAGGCCACTTCCGGAATTGATGGACGCCATTCGCCAAGTCAA GCTTGGAGGTAACGAGAAGACCTTTGAGTTGACAGAGAAGAAGCTTGTTGCTGCTTCAGCTGCGGTCCCGGATGATAGCCAGAGCAGAATCCTGGCTGCT CATGAACGGTTTCTTGCTCGAAAAGGGAACAAATGA
AA sequence Show only first row Show all	>Lus10036985 pacid=23171255 polypeptide=Lus10036985 locus=Lus10036985.g ID=Lus10036985.BGIv1.0 annot-version=v1.0 MPKLFMSMGRTPKVCQLLHCFQHPHDVLLIEHLSHRLGKLEPGDIVLVRSPVEPGKIVAKWIVAMEGDRVTFLTALHIPVRRSIVFALAMTNSYNTIVSF RVMAIMLFFMVFGIGVNGMVNNDNMKFDRDGILKTIVSGDETIDCVDIYKQPAFNNPLLKNHTLQLKPSSYPRGSRSKVVVNSTKYIQMWHKNGEYCPKG TIAMLRSSTTTWAFKDIEVAGVSSSYDYYGLNMDMSVWSPQTQPNEMSSSQVWVFGGDGLIVQSFQAGWMRDATEVSGCYNLDCPGFVQTSSTIVLGSQL NPVSIYGGQQFFINLKIHKDFKTGNWWLNIQGTDIGYWPGDLLPSMKISATVMVWGGKVSNTKPKGVHTRTQMGSGHFPSEGFGKAAWFKNLEYVDDKGS FQDVRFIQTTASDENCYDAQVQDWDQNFVLPNVEAVKVLNPLVTRNDNYQKSFPPFSTNPNTSRALLLHCSDVKDVPSVVPVSYAPRVAPLPEDKVEGEV QESAKDGEDMKTEVRRVETENRAMRRILRMEEQTEQAVVPFPRLMVPEKKKEKRPLPELMDAIRQVKLGGNEKTFELTEKKLVAASAAVPDDSQSRILAA HERFLARKGNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	0	1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	4.2	0.7986
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	4.6	0.7601
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	5.1	0.7833
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10005434 [exp]	16.2	0.6575
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	23.1	0.7161
AT4G34500			Protein kinase superfamily pro...		Lus10040459 [exp]	30.7	0.7415
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	34.1	0.7206
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	41.6	0.7125
AT5G52450			MATE efflux family protein (.1...		Lus10017949 [exp]	42.4	0.7062
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	48.1	0.7229

Compare expression of checked genes

Lus10036985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.