Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18460 248 / 4e-77 Protein of Unknown Function (DUF239) (.1) AT2G44220 246 / 1e-76 Protein of Unknown Function (DUF239) (.1) AT3G48230 241 / 4e-75 Protein of Unknown Function (DUF239) (.1) AT3G13510 234 / 4e-72 Protein of Unknown Function (DUF239) (.1) AT5G56530 233 / 2e-71 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 232 / 4e-71 Protein of Unknown Function (DUF239) (.1) AT2G44240 231 / 4e-71 Protein of Unknown Function (DUF239) (.1) AT1G23340 228 / 9e-70 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 225 / 4e-68 Protein of Unknown Function (DUF239) (.1) AT2G44210 222 / 4e-67 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036985 [exp] 589 / 0 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 444 / 4e-154 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 390 / 6e-133 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 381 / 1e-129 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 379 / 1e-128 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10006859 [exp] 379 / 1e-128 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 357 / 3e-120 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 303 / 9e-100 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 286 / 2e-92 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024100 [exp] 262 / 2e-82 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 256 / 2e-80 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 249 / 9e-78 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 243 / 2e-75 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 239 / 5e-74 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 224 / 1e-67 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 223 / 1e-67 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 224 / 2e-67 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 221 / 2e-66 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 189 / 6e-55 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10036998 pacid=23171233 polypeptide=Lus10036998 locus=Lus10036998.g ID=Lus10036998.BGIv1.0 annot-version=v1.0 ATGAATACCAAGGTTTTACACGAGGAAGTTGATGCCGGTGACGGAATTGATTACTCCGACTGGTTCTTGTCCGACGATGTGTACGACAGTATCGGTGAAG CGGCGCAAGCAGCGAAACAGATTGCTGCGACGCTTAATTTCCATCAGATCAAGGGGTCCAACAAAAGCAATGACTCGAAAAAGGAGTGTCGGGTGTATCT GTATTTTTCACGCGGACCCGTTCACAAGTCTGAGGGTCCATATCCGCCGAAACGAGCGACGAAGTCAAAAAAGTGCAATTGCCCATTCAAACTTGTCATG CGCGAGGGCACCAGTAAGGAGCGCCCTGAGGATGCACGGGTGGCTGTGGCGTCGATACTAGTACATGTATCGCGAATCGACATCGATCACGTCATCGATA CGTCAAATCAAAGACTGAAATGGCATCAGTCGGGATCAGTCCTCATCCTTCCATGCTCTATCAGTGTTGTCAGCCCACTCAACCAGAGCGGAGACGAAAT TATTGATTGTGTGGACATCTATAAACAACCCGCTTTCAACAATCCGCTCTTGAAAAATCACACTCTTCAGTTGAAACCAAGTTCATACCTGAGGGGATCG AGATCCAAAGTTGTGGTTAACTCAACAAAATATATTCAAATGTGGCATAAGAATGGTGAATATTGCCCCAAGGGAACAATAGCAATGTTGAGATCGTCAA CGACGACTTGGGCATTTAAGGACATTGAGGTGGCGGGAGTGTCGTCGTCGTCGTATGATTACTATGGACTCAATATGGATATGAGCGTATGGAGCCCACA AACACAACCAAACGAAATGAGCTCATCCCAAGTTTGGATGTTCGGTGGTGACGGCTTCAAAGTGCAGTCGTTTCAAGCTGGTTGGATGGTAACGCCATTG AAGCCAAAACCCACCATCTTCGCATATTGGACCAGGGATGCAACCGAAGTATCTGGATGCTACAATCTAGACTGTCCTGGTTTTGTTCAAACAAGTTCTA CCATTGTCCTCGGTTCTCAACTAAACCCAGTTTCCATCTATGGCGGCCAACAATTTTTTATCAACCTCAAAATTCACAAAGATTTTAAAACGGGCAACTG GTGGCTAAACATCCAAGGAACGGATGTAGGGTACTGGCCGGGAGATCTATTGCCGAGCATGAAGATATCTGCAAATGTGATGCTGTGGGGAGGTAAAGTT AGCAATACGAAGCCGAAAGGGGTTCACACAAGGACTCAGATGGGGAGCGGCCATTTCCCGAGCGAAGGCTTCGGAAAGGCGGCCTGGTTCAAGAACTTAG AATATGTGGACGACAAGGGATCGTTCCAGGATGTCCGCTTTATTCAAACAACAGCTTCGGATGAAAATTGTTACGACGCACAAGTGCAGGATTGGGATCA GAATTTTGGTACTCATTTCCTCTACGGTGGTCCTGGCTATTCCTCTATTTGCCAGAACTAG
AA sequence Show only first row Show all	>Lus10036998 pacid=23171233 polypeptide=Lus10036998 locus=Lus10036998.g ID=Lus10036998.BGIv1.0 annot-version=v1.0 MNTKVLHEEVDAGDGIDYSDWFLSDDVYDSIGEAAQAAKQIAATLNFHQIKGSNKSNDSKKECRVYLYFSRGPVHKSEGPYPPKRATKSKKCNCPFKLVM REGTSKERPEDARVAVASILVHVSRIDIDHVIDTSNQRLKWHQSGSVLILPCSISVVSPLNQSGDEIIDCVDIYKQPAFNNPLLKNHTLQLKPSSYLRGS RSKVVVNSTKYIQMWHKNGEYCPKGTIAMLRSSTTTWAFKDIEVAGVSSSSYDYYGLNMDMSVWSPQTQPNEMSSSQVWMFGGDGFKVQSFQAGWMVTPL KPKPTIFAYWTRDATEVSGCYNLDCPGFVQTSSTIVLGSQLNPVSIYGGQQFFINLKIHKDFKTGNWWLNIQGTDVGYWPGDLLPSMKISANVMLWGGKV SNTKPKGVHTRTQMGSGHFPSEGFGKAAWFKNLEYVDDKGSFQDVRFIQTTASDENCYDAQVQDWDQNFGTHFLYGGPGYSSICQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	0	1
					Lus10027053 [exp]	2.0	0.9331
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	7.9	0.8237
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	8.3	0.8395
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	9.1	0.9189
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	9.6	0.9041
					Lus10025505 [exp]	9.8	0.8928
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	11.2	0.8399
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	14.9	0.7196
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	16.7	0.8832
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	22.3	0.8654

Compare expression of checked genes

Lus10036998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.