Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 511 / 0 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 273 / 9e-90 GONST4 golgi nucleotide sugar transporter 4 (.1) AT2G13650 54 / 7e-08 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034672 [exp] 507 / 0 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 480 / 2e-171 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 480 / 5e-171 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10033058 [exp] 303 / 3e-101 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 301 / 1e-100 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 301 / 2e-100 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 300 / 3e-100 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10024126 [exp] 52 / 3e-07 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10001205 [exp] 43 / 0.0004 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 570 / 0 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 565 / 0 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 298 / 2e-99 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.007G106400 [exp] 50 / 1e-06 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 49 / 2e-06 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10037000 pacid=23171187 polypeptide=Lus10037000 locus=Lus10037000.g ID=Lus10037000.BGIv1.0 annot-version=v1.0 ATGCCTGGTGATGTGGAGAATCCTAAAGGTGTCCAGGACCAGAAGGGTACAGCACCATCCTCAACAACCAATGAAGTTAAGTCTACCTGGTCCAGTTTCT TGCTCGAAAAGACATCCATCTACGGAGTAGCTGCAGGATACTGCATCTCAGCATCCTTGCTATCGATCATCAACAAGTGGGCCGTCATGAAGTTCCCTTA TCCCGGAGCCTTAACTGCTCTGCAGTATTTCACCAGTGCTGCTGGGGTGCTACTATTCGGGTCAATGAAACTCCTAGAGCACGACAGGCTCGACCTTTTA ACCATGTGGCGGTTCTTACCAGCTGCAATTATGTTCTACCTCTCACTCTTCACCAACAGCGAGCTCTTACTCCACGCCAATGTTGATACCTTCATTGTCT TCCGTTCGGTGGTCCCTATCTTCGTCGCAGTAGGCGAGACTCTCTTCTTGCACCAGCCTTGGCCGGCTCTAAAGACGTGGCTCTCACTTGGAACCATCTT CGGCGGAAGTGTCCTCTATGTCTTGACAGATTACCAGTTTACCCTCACCGCATACAGTTGGGCTCTTGCTTACCTGATAAGCATGACCATCGATTTCGTG TACATTAAGCATGTCGTAATGACCATCGGTTTAAACACATGGGGTCTGGTCCTCTACAACAATCTCGAAGCCCTCCTCCTATTCCCGTTGGAACTGCTGA TCATGGGCGAACTGAAGAAGATCAAGCACGAGATATCGGAAGAGACTGATTGGTACTCGTTCGAGGTGGTTCTTCCCGTTGGACTGTCCTGTCTTTTCGG TTTAGCCATCTCGTTCTTCGGATTCTCCTGCCGGAGAGCCATCTCTGCTACCGGGTACACAGTTCTTGGTGTGGTTAACAAGCTTCTGACGGTGATAATC AATCTCGTTATCTGGGATAAGCATGCTACATTCGTTGGCACTGTCGGCTTGCTCATCTGTATGACCGGGGGGGTCTTATATCAGCAATCTACAAGCAACA AGCCAAAGGCTGCACCAGCAGTAGAAACAGAGGAAGAAGAAATAAAGTTACTGGAAATGCAGAGTAGCAGCGAGAAAGAAGTATTATCTGAGCCTCAGCA AGGTAAATGA
AA sequence Show only first row Show all	>Lus10037000 pacid=23171187 polypeptide=Lus10037000 locus=Lus10037000.g ID=Lus10037000.BGIv1.0 annot-version=v1.0 MPGDVENPKGVQDQKGTAPSSTTNEVKSTWSSFLLEKTSIYGVAAGYCISASLLSIINKWAVMKFPYPGALTALQYFTSAAGVLLFGSMKLLEHDRLDLL TMWRFLPAAIMFYLSLFTNSELLLHANVDTFIVFRSVVPIFVAVGETLFLHQPWPALKTWLSLGTIFGGSVLYVLTDYQFTLTAYSWALAYLISMTIDFV YIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEISEETDWYSFEVVLPVGLSCLFGLAISFFGFSCRRAISATGYTVLGVVNKLLTVII NLVIWDKHATFVGTVGLLICMTGGVLYQQSTSNKPKAAPAVETEEEEIKLLEMQSSSEKEVLSEPQQGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10037000 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	15.9	0.7739
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10017407 [exp]	21.3	0.7331
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	24.9	0.6617
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	42.7	0.7162
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10043399 [exp]	44.4	0.6525
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	55.6	0.6816
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019431 [exp]	64.3	0.6985
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010042 [exp]	81.7	0.7019
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	89.4	0.6908
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	99.1	0.6806

Compare expression of checked genes

Lus10037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.