Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50940 436 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 429 / 5e-146 BCS1 cytochrome BC1 synthesis (.1) AT2G18193 417 / 3e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17730 395 / 6e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 387 / 1e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17740 371 / 6e-124 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 338 / 7e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 337 / 6e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 329 / 2e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015802 [exp] 835 / 0 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 404 / 3e-137 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 379 / 4e-127 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 369 / 3e-123 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 347 / 1e-116 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10007391 [exp] 351 / 3e-116 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042166 [exp] 330 / 7e-108 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10041918 [exp] 327 / 3e-106 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 324 / 7e-106 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177200 [exp] 575 / 0 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 469 / 2e-163 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 453 / 2e-156 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 451 / 1e-155 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020800 [exp] 439 / 1e-150 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020500 [exp] 434 / 7e-150 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 426 / 9e-146 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.009G119132 [exp] 397 / 6e-134 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.002G032700 [exp] 393 / 1e-133 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 377 / 6e-126 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10037004 pacid=23171206 polypeptide=Lus10037004 locus=Lus10037004.g ID=Lus10037004.BGIv1.0 annot-version=v1.0 ATGTTTACCACATCCACCTTACCCTCGACCTCCTCGGTCCTATCAATGTACTCCATGTTTGCGGCCACGACAATGCTGATCCGAACCGTACTCAACGAGG TCCAAACCGTAACCACCCAACTAATCCCGCACGCCCTCCAGACCAAGATCGCATCCGTCCTCGGACGTTTCCTATCCCTCGACCCTTCTTCGTCCCAACT GACCCTCTACATCAACGAGTACGACGGTATGTCATACAACGAGTTGTACCAAGCCTCGGAATCGTACTTGAGCACAAGGATCAACGACTCGATCGGACAG CTGAGAATCAGTAAAAAGTCTCAGGAGGAATCTTTATCGATTACGGTAAATAAAGGGCAAAAGATTCGTGATGTGTTTCAAGGAATCGAGCTTGTATGGG AATTTGTTAGCACGGAGACGCAACAAATTGTTGTTAATTACGAAGACATGACTGGGGAACCGTCAAAGTCGGAGCATAAGACCGTTATGCTTAGCTTCCA TAAGCAACATAAAGATAAGATATTATGTAGCTACCTTCCTCAAGTAATGAAGACATTCAAGGAAATAGAGAGCAAGAAGAGATACGTGAGGCTGTACGCC TACGGCAGCATCACAGGCCAATACGATGGACCCTGGTCGTACATCAATCTGGACCATCCATCGACGTTCAAGACACTAGCAATGGATCCAATGCTCAAGA ATGAAATAATCGACGATCTGGATCGCTTCGTGAGGCGCAGGGAGTTCTACCGCAGGGTAGGGAAGCCGTGGAAGAGAGGGTACTTGCTTTATGGTCCACC TGGCACCGGGAAGTCCAGCCTGGTTGCTGCCGTGGCTAATCACTTGAAGTTCGACGTGTATGACCTGGAGCTGTCCAGCGTGGCGAGTAACGGCGAGCTA AGGAGGCTGCTGACTGGGACTGCTAACCGGTCGATTGTGGTGATTGAAGACATTGATTGTACCGTTGAGCTGCAGGATCGGACCGGTGATGGGTACCACC ATCAGAGTGGTACGGATAATCAGCTGACACTGTCCGGACTGCTGAATTTCATCGATGGACTATGGTCGAGTTGCGGAGACGAAAGGATAATAATATTCAC GACGAACCACAAAGAGAAGCTAGACCCAGCATTGTTGAGGCCAGGGCGCATGGACATGCACATTCACATGTCCTACTGCAACCCTGCTGGGTTTAGGATT CTGGCCTCCAACTACCTCCAGGTCGAAAGCCACGATCTTTTCGACCAGATCGAGCAGCTTGTCGAGGAAGTCGAGGTGACACCTGCAGAGATTGCCGAGG AGCTGATGAAGGGTGAAGATGTTGATGCTGTGCTTGAAGGAGTTGTTGGGTTTCTGGAGAAGAAGAAGATGAAGGGGGTGAAGTTGGAGAATGAGGAAGT TGAGAATTAA
AA sequence Show only first row Show all	>Lus10037004 pacid=23171206 polypeptide=Lus10037004 locus=Lus10037004.g ID=Lus10037004.BGIv1.0 annot-version=v1.0 MFTTSTLPSTSSVLSMYSMFAATTMLIRTVLNEVQTVTTQLIPHALQTKIASVLGRFLSLDPSSSQLTLYINEYDGMSYNELYQASESYLSTRINDSIGQ LRISKKSQEESLSITVNKGQKIRDVFQGIELVWEFVSTETQQIVVNYEDMTGEPSKSEHKTVMLSFHKQHKDKILCSYLPQVMKTFKEIESKKRYVRLYA YGSITGQYDGPWSYINLDHPSTFKTLAMDPMLKNEIIDDLDRFVRRREFYRRVGKPWKRGYLLYGPPGTGKSSLVAAVANHLKFDVYDLELSSVASNGEL RRLLTGTANRSIVVIEDIDCTVELQDRTGDGYHHQSGTDNQLTLSGLLNFIDGLWSSCGDERIIIFTTNHKEKLDPALLRPGRMDMHIHMSYCNPAGFRI LASNYLQVESHDLFDQIEQLVEEVEVTPAEIAEELMKGEDVDAVLEGVVGFLEKKKMKGVKLENEEVEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	0	1
AT1G70780			unknown protein		Lus10009131 [exp]	3.5	0.8078
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10012816 [exp]	3.7	0.7859
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	4.0	0.8067
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	5.1	0.8346
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	5.6	0.7210
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026932 [exp]	6.4	0.6787
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	10.2	0.8010
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	10.4	0.8073
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	14.9	0.7987
					Lus10036275 [exp]	15.2	0.7918

Compare expression of checked genes

Lus10037004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.