Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71680 216 / 1e-67 Transmembrane amino acid transporter family protein (.1) AT1G67640 206 / 3e-64 Transmembrane amino acid transporter family protein (.1) AT5G40780 203 / 7e-63 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 200 / 1e-61 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 199 / 4e-61 Transmembrane amino acid transporter family protein (.1) AT3G01760 193 / 8e-59 Transmembrane amino acid transporter family protein (.1) AT1G61270 191 / 4e-58 Transmembrane amino acid transporter family protein (.1) AT1G25530 158 / 9e-46 Transmembrane amino acid transporter family protein (.1) AT1G47670 108 / 9e-27 Transmembrane amino acid transporter family protein (.1) AT4G35180 88 / 9e-20 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008263 [exp] 232 / 4e-73 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 199 / 4e-61 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 198 / 5e-61 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 197 / 7e-61 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 196 / 7e-60 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 194 / 2e-59 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 193 / 3e-59 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10036933 [exp] 178 / 2e-52 AT1G71680 142 / 8e-37 Transmembrane amino acid transporter family protein (.1) Lus10041482 [exp] 161 / 9e-47 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091600 [exp] 206 / 7e-64 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 205 / 1e-63 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 204 / 2e-63 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335200 [exp] 196 / 6e-60 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 188 / 3e-57 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G118000 [exp] 171 / 1e-50 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G128300 [exp] 168 / 2e-49 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 108 / 9e-27 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 91 / 7e-21 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 82 / 7e-18 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037052 pacid=23152314 polypeptide=Lus10037052 locus=Lus10037052.g ID=Lus10037052.BGIv1.0 annot-version=v1.0 ATGGAAGATCACCGTGGCTCATCAGAAATAGCACAAGCAGAAGAGCTGAATACCCCGATCGCGGCGACGAAAAAAGAAGAAGAAGAAGAAGATCAGAACA GAGATCTCAACAATTGGCTTCCCATAACTGCATCAAGAGAAGCCAAATGGCGGTACTCTACTTTCCACAACGTCACTGCCATGGTGGGCGCCGGCGTTCT TGGCCTACCTTTCGCAATGTCCCAGCTCGGATGGACTGCCGGACTGATAGCCATAGTGATGTCCTGGCTGATCACATTCTACTCCCTCTGGCTAATGGTC GAGATGCACGAGCTATTCCCGGGGAAGCATTTCGATCGATACCATGAACTAGGCCAACACGCATTCGGCGAAAAGAGAGGCTACTGGATAGTGTTCCCTC AACAATTCATCGTCCAAGTCGCCTCGGACATCGTTTACATGGTCACCGGCGGAAAATCACTGAAAAAGTTCTTCGAACTCAGCCATGCCATAAATCGGAG ACCATCGTCAAACATACTTCATCTTAGCATTCTACATCTCCCAAACCCCAAACTTCAACTCCCTCAAGATAGTCTCCTTACTAGCGGCCCTCATGACGGG GTCGTATTCGATGATCGCTTTCGTGACATCGACCGTCAAGGGTGCCAACAATGTTCGTGCGGTGAGTTACGAGCTAAGAGCTCATACGAAAAGCAGAATC ACATTCAAAGTGTTGAACGCGCTTGGGGAGATAGCGTTTGCGTTTGCGGGACATAG
AA sequence Show only first row Show all	>Lus10037052 pacid=23152314 polypeptide=Lus10037052 locus=Lus10037052.g ID=Lus10037052.BGIv1.0 annot-version=v1.0 MEDHRGSSEIAQAEELNTPIAATKKEEEEEDQNRDLNNWLPITASREAKWRYSTFHNVTAMVGAGVLGLPFAMSQLGWTAGLIAIVMSWLITFYSLWLMV EMHELFPGKHFDRYHELGQHAFGEKRGYWIVFPQQFIVQVASDIVYMVTGGKSLKKFFELSHAINRRPSSNILHLSILHLPNPKLQLPQDSLLTSGPHDG VVFDDRFRDIDRQGCQQCSCGELRAKSSYEKQNHIQSVERAWGDSVCVCGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	0	1
AT3G62650			unknown protein		Lus10010026 [exp]	1.4	0.8895
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	1.4	0.9220
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	5.7	0.8492
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	6.0	0.8787
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	6.9	0.8308
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	6.9	0.8884
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	8.1	0.8431
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	9.2	0.8565
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	10.2	0.8528
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	10.6	0.8319

Compare expression of checked genes

Lus10037052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.