Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 258 / 1e-79 GRAS RGL1 RGA-like 1 (.1) AT1G14920 245 / 2e-74 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 241 / 2e-73 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 242 / 3e-73 GRAS RGL2 RGA-like 2 (.1) AT2G01570 231 / 9e-69 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 221 / 8e-65 GRAS SCL1 SCARECROW-like 1 (.1) AT2G04890 211 / 4e-63 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50420 212 / 2e-62 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT5G48150 209 / 1e-61 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT5G41920 204 / 2e-60 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036932 [exp] 974 / 0 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10017930 [exp] 569 / 0 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10014786 [exp] 422 / 8e-144 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10031172 [exp] 312 / 2e-99 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10041540 [exp] 310 / 1e-97 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 309 / 3e-96 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10031748 [exp] 302 / 2e-95 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10022418 [exp] 242 / 1e-74 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10033583 [exp] 244 / 2e-73 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093900 [exp] 610 / 0 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 601 / 0 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 320 / 3e-103 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 300 / 7e-94 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 251 / 3e-76 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 245 / 4e-74 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 243 / 5e-73 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 236 / 2e-70 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 221 / 1e-65 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.002G073400 [exp] 217 / 2e-63 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037055 pacid=23152262 polypeptide=Lus10037055 locus=Lus10037055.g ID=Lus10037055.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTTCCGATCGTTTCCTATCAGCTGACTTCAGCAGCAATGAAGGAAGTGTTATTAACTCGAGTGATCTTGATCTTAATCTGTGCCAGTTTC CATACTATCCAGCGTTCCAGGAGAAACGAACCGCTGATTACACCTTCGACGAGCCTAAACGCCAGAAGAGGCAAAAGAACGAGGCCGGGGCGAGCAGTAA CGATGGCAGTTGTGTTTCAGATAGCAACAGCAGCTTCAACAGCTTGCCGAAGCTCCAGTTCCGGGACTACGTCTGGGCTTACGCAGAGAGGTTCTTGGCG ATCGAGGCCATGGAAGAAGCTGCGGCTACTCTGACAGTAGTGGGAGAAGAAGAAGTTAGGATTGAGGATGTGAAGGAGGAAACCGGCGTGGATGGGATGA AACTTGTTCAGCAGCTGATCGCCTGTGCGGAAGCGGTAGCCTGCCGGGACAAAGCTCATGCTTCGGTCTTGCTCTCCGAGTTAAGGTCGAACGCGCTTGT TTTCGGGACATCGTTTCAGAGGGTTGCTTCGTGCTTTGTGCAGGGGTTATCCGATCGACTCACGCTTGTTCAGCCGCTGGGAACAGTTGGAGTTCTGGGT TCGCAGGCTAATAAAGTTCCGTCCTTTTCGGCCGAAAAGGATGAAGCTTTAACGCTTGCGTACGAGCTTTGCCCTCAGATCCAGTTCGGACACTTTGTGG CAAACACGGCAATCCTCGAAGCCCTTGAGGGAGAGAGTTCAATTCATGTTGTTGACCTTGGGATGACTTTGGGTCTCCCTTACGGTCAGCAATGGCAGCA GCTGATGCACAGCTTGGCTAGCCGATCTACACGCAACAAACCGGCACCGCGCCTGCGAATCACCGGAGTCGGTTCCTCAGCAGAACGACTCCAGGCGATC GGGTTCGAGCTCGATTGCTATGCGGGGAGCCTGGGACTAAGTTTCGAGTTCATGTACATCAAGAGCAGCCTGGAAAGTCTCAAACCGGAGCATTTCGACG TTCAGGAAGGTGAATCGGTGGTCCTCAATAGCGTCCTCCAGATGCATTGCGTAGTGAAGGAGAGCCGCGGAGCTCTAAACTCGGTCCTCCAAGTACTCAA CGAGCTCTCCCCGAAAGCCTTTGTTCTGGTCGAGCAGGACTCGAATCACAATGGCCCATTCTTCCTAGGAAGGTTCATGGAATCGCTGCATTATTACTCG GCCGTATTCGATTCGCTGGACTCGATGCTCCCCAAGTACGACACCAGGAGGGCCAAGATAGAGCAGTTCTACTTTGCTGACGAGATCAAGAACATCGTGA GCTGCGAAGGGTCTGCTAGAGTGGAGCGGCACGAGAGGGCTGATCAGTGGCGGAGGAGGATGAGCCGGGCCGGGTTCCAGGCCTCGCCGTTGAAGATGGT GGCTCAGGTTAAGCAGTGGATGGGTAAAGCCAAGTTCTGTGATGGGTATTCTGTGAATGAGGAGAAAGGGTGCTTGATTCTTGGGTGGCAATCTAGACCA GTCATTGCAGCTTCTTGCTGGAAGTGCTCAAAGATTTAA
AA sequence Show only first row Show all	>Lus10037055 pacid=23152262 polypeptide=Lus10037055 locus=Lus10037055.g ID=Lus10037055.BGIv1.0 annot-version=v1.0 MVVASDRFLSADFSSNEGSVINSSDLDLNLCQFPYYPAFQEKRTADYTFDEPKRQKRQKNEAGASSNDGSCVSDSNSSFNSLPKLQFRDYVWAYAERFLA IEAMEEAAATLTVVGEEEVRIEDVKEETGVDGMKLVQQLIACAEAVACRDKAHASVLLSELRSNALVFGTSFQRVASCFVQGLSDRLTLVQPLGTVGVLG SQANKVPSFSAEKDEALTLAYELCPQIQFGHFVANTAILEALEGESSIHVVDLGMTLGLPYGQQWQQLMHSLASRSTRNKPAPRLRITGVGSSAERLQAI GFELDCYAGSLGLSFEFMYIKSSLESLKPEHFDVQEGESVVLNSVLQMHCVVKESRGALNSVLQVLNELSPKAFVLVEQDSNHNGPFFLGRFMESLHYYS AVFDSLDSMLPKYDTRRAKIEQFYFADEIKNIVSCEGSARVERHERADQWRRRMSRAGFQASPLKMVAQVKQWMGKAKFCDGYSVNEEKGCLILGWQSRP VIAASCWKCSKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037055 [exp]	0	1
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	3.7	0.8465
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	6.2	0.8654
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	13.1	0.8095
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	24.2	0.8172
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	24.5	0.8433
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	26.1	0.8301
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	27.6	0.8305
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	27.7	0.8339
AT3G09050			unknown protein		Lus10035515 [exp]	30.8	0.8346
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	33.8	0.8081

Compare expression of checked genes

Lus10037055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.