Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46110 446 / 4e-156 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT1G61800 222 / 9e-69 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 220 / 5e-68 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G17630 197 / 9e-59 Nucleotide/sugar transporter family protein (.1) AT3G01550 170 / 6e-49 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 160 / 5e-45 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT4G03950 114 / 7e-29 Nucleotide/sugar transporter family protein (.1) AT1G77610 72 / 1e-13 EamA-like transporter family protein (.1) AT1G21870 70 / 6e-13 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 62 / 1e-10 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013978 [exp] 455 / 2e-159 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 454 / 3e-159 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10018356 [exp] 220 / 6e-68 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10007653 [exp] 219 / 1e-67 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10043060 [exp] 219 / 4e-67 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10011155 [exp] 218 / 6e-67 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10004312 [exp] 194 / 9e-58 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10019209 [exp] 194 / 1e-57 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10013083 [exp] 182 / 4e-53 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095200 [exp] 504 / 7e-179 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 456 / 9e-160 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 432 / 2e-152 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G019900 [exp] 221 / 3e-68 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 216 / 2e-66 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.001G420200 [exp] 213 / 4e-65 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.013G071900 [exp] 202 / 2e-60 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G347300 [exp] 183 / 2e-53 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.012G082100 [exp] 175 / 2e-50 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.015G077900 [exp] 171 / 6e-49 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10037085 pacid=23152401 polypeptide=Lus10037085 locus=Lus10037085.g ID=Lus10037085.BGIv1.0 annot-version=v1.0 ATGAAAGCTCGATCGATGTCATCTTCAGCTAGGTTGACTTTCTTGCCGTTGGCGGTTGACTTGCCGCCGGTAAGGGAATTGGGGTTTTCACTCTCTTCCA GTCAAACCATTAGGAGAAGAACCGTTGAGGGTCTGATCGTTAAGGCAGCTGATGCTGATCGACACTTGGAGGATGGATTTGGTGAGAGATTGCCACCTGC TTTGGTTACTGGATTCTTTTTCTTTACTTGGTACTTCTTGAATGTCATCTTCAACATACTCAACAAGAAAGTCTACAACTACTTCCCTTACCCATACTTT GTCTCTGTGGTTCATCTCCTGGTCGGAGTGGTGTACTGTCTTGGTTCTTGGTCTGTTGGCCTCCCTAAACGAGCTCCGATGAGTAAAGAGCTCCTGCTGC TACTGACTCCTGTCGCGTTCTGTCATGCTCTTGGCCATGTTATGTCCAATGTATCGTTTGCAGCTGTTGCCGTCTCATTTACACACACTATTAAAGCTCT GGAGCCATTCTTCAGTGCTTCTGCTTCTCAGTTCGTGTTGGGCCACCAAATTCCGCTCTCACTGTGGCTATCCTTGATGCCAGTTGTTCTTGGTGTATCA ATGGCATCACTGACTGAACTATCCTTCAACTGGACTGGTTTCATCAGTGCCATGATCTCGAATGTTGCATTTACCTACAGAAGCATCTACTCCAAGAAAG CAATGACTGGCATGGATAGCACAAATGTCTACGCCTACATCTCGATAATTGCTCTCATCGTCTGCATCCCACCGGCAATATTGATAGAAGGCCCTACGCT AATGCAACATGGTTTCAGCGATGCCATTGCCAAAGTCGGGTTGAACAAGTTCTTGTTTGACTTGTTCTGGATAGGAATGTTCTATCATCTTTACAACCAG GTTGCCACAAATACATTGGAAAGGGTTGCACCACTCACGCATGCAGTTGGGAATGTCCTGAAGAGAGTGTTTGTCATCGGTTTCTCCATCGTTGTTTTCG GCAACAAAATCTCTACACAGACAGGAATCGGTACCGCGATAGCCATTGCAGGTGTTGCTACCTACTCTCTGATCAAAGCTAACATAGAAGAGCAAATCAG GTATCGAGAGTTATATATGTTTGGTGTACTCGATACTGAACGAGTTTGTCTCAACATTTTAACTGGTGTTTTTTTTTCGATTTCCTTTTGTTTGTTCTAC AGAAAGCAACGTCATAACGAATGA
AA sequence Show only first row Show all	>Lus10037085 pacid=23152401 polypeptide=Lus10037085 locus=Lus10037085.g ID=Lus10037085.BGIv1.0 annot-version=v1.0 MKARSMSSSARLTFLPLAVDLPPVRELGFSLSSSQTIRRRTVEGLIVKAADADRHLEDGFGERLPPALVTGFFFFTWYFLNVIFNILNKKVYNYFPYPYF VSVVHLLVGVVYCLGSWSVGLPKRAPMSKELLLLLTPVAFCHALGHVMSNVSFAAVAVSFTHTIKALEPFFSASASQFVLGHQIPLSLWLSLMPVVLGVS MASLTELSFNWTGFISAMISNVAFTYRSIYSKKAMTGMDSTNVYAYISIIALIVCIPPAILIEGPTLMQHGFSDAIAKVGLNKFLFDLFWIGMFYHLYNQ VATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVATYSLIKANIEEQIRYRELYMFGVLDTERVCLNILTGVFFSISFCLFY RKQRHNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	1.4	0.9704
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	2.0	0.9650
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	2.4	0.9716
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	3.5	0.9678
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	3.9	0.9535
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	3.9	0.9646
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	4.7	0.9501
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	7.1	0.9490
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	8.0	0.9469
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	9.7	0.9418

Compare expression of checked genes

Lus10037085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.