Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 116 / 1e-30 Cupredoxin superfamily protein (.1) AT5G21105 92 / 2e-22 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 92 / 6e-22 Plant L-ascorbate oxidase (.1) AT1G55570 59 / 1e-10 SKS12 SKU5 similar 12 (.1) AT3G13400 52 / 5e-08 SKS13 SKU5 similar 13 (.1) AT1G21850 49 / 6e-07 SKS8 SKU5 similar 8 (.1) AT5G51480 48 / 9e-07 SKS2 SKU5 similar 2 (.1) AT3G13390 48 / 1e-06 SKS11 SKU5 similar 11 (.1) AT1G21860 44 / 3e-05 SKS7 SKU5 similar 7 (.1) AT1G76160 43 / 6e-05 SKS5 SKU5 similar 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009603 [exp] 177 / 7e-53 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 174 / 7e-52 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10036956 [exp] 132 / 2e-39 AT4G39830 136 / 6e-40 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 122 / 2e-32 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 122 / 2e-32 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10025538 [exp] 99 / 4e-24 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026753 [exp] 95 / 7e-23 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10037106 [exp] 49 / 2e-07 AT3G04070 78 / 3e-17 NAC domain containing protein 47 (.1.2) Lus10021864 [exp] 48 / 9e-07 AT1G55570 814 / 0.0 SKU5 similar 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171700 [exp] 135 / 2e-37 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 123 / 6e-33 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 120 / 3e-32 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 119 / 9e-32 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 105 / 2e-26 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.009G159700 [exp] 98 / 4e-24 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 94 / 1e-22 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G000500 [exp] 54 / 9e-09 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 52 / 5e-08 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 51 / 8e-08 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10037103 pacid=23152302 polypeptide=Lus10037103 locus=Lus10037103.g ID=Lus10037103.BGIv1.0 annot-version=v1.0 ATGGAAGCCGATGGTGGTGTAGACTATAGGCTCCTCCTTCTGCAACCTCCACATGAAGTTTCCGAAGCTCCTCTCGACTCGCTTGCCCTTCTCGTTCCTC TTCTTCTTTTGCTTGGTGAAGAAGAAGAGCTCCGACTAGTTGACCTCGCTCTCGAAGTGTCTCTTCCATGGCTCGTCGGGGGTGTAACACCCCAAGGTCA CAAGATGACGGTGATGGAAGCCGACGGGAACTACGTGGAACTATTCGACACGGAGGTCTACTCCGGCGAGACCTACTCCGTGTTGGTGAAAGCCGATCAG CCTCCAACGAGGAATTACTGGATCACCACGAGCGTCGTCGCTCGGAAACCTTCAACTCCGGCTGGTATCGCAATTCTCAACTACGGTCCCGCCAGCTGGA CCTCAATGGAACAGAGTCGGGCATTTAAGGCCCGGAAAGGCTACGTCCACAAACCGCCTCCGAAACTGGACCGGGTCATCAAGCTACTCAACACGCAGAA CAAGATTGGAGGGAAATTCAAATGTTGA
AA sequence Show only first row Show all	>Lus10037103 pacid=23152302 polypeptide=Lus10037103 locus=Lus10037103.g ID=Lus10037103.BGIv1.0 annot-version=v1.0 MEADGGVDYRLLLLQPPHEVSEAPLDSLALLVPLLLLLGEEEELRLVDLALEVSLPWLVGGVTPQGHKMTVMEADGNYVELFDTEVYSGETYSVLVKADQ PPTRNYWITTSVVARKPSTPAGIAILNYGPASWTSMEQSRAFKARKGYVHKPPPKLDRVIKLLNTQNKIGGKFKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	3.3	0.8129
					Lus10024679 [exp]	3.5	0.7617
					Lus10023538 [exp]	4.2	0.7477
AT4G12410			SAUR-like auxin-responsive pro...		Lus10004337 [exp]	4.5	0.7295
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	8.9	0.7539
AT4G35210			Arabidopsis protein of unknown...		Lus10023951 [exp]	11.3	0.7341
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10002868 [exp]	12.6	0.6655
AT2G03430			Ankyrin repeat family protein ...		Lus10036968 [exp]	25.0	0.6894
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	25.7	0.6536
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	31.6	0.7115

Compare expression of checked genes

Lus10037103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.