Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 676 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 647 / 0 AAP2 amino acid permease 2 (.1) AT1G44100 644 / 0 AAP5 amino acid permease 5 (.1) AT5G63850 639 / 0 AAP4 amino acid permease 4 (.1) AT1G10010 535 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 528 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 526 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G23810 427 / 8e-147 AAP7 amino acid permease 7 (.1.2) AT5G40780 166 / 3e-46 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 163 / 5e-45 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036777 [exp] 898 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 799 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 795 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 719 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 706 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 634 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042744 [exp] 620 / 0 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 570 / 0 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 549 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079500 [exp] 692 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 687 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 686 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 678 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 677 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.005G068900 [exp] 676 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 673 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 669 / 0 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 638 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 554 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037150 pacid=23152498 polypeptide=Lus10037150 locus=Lus10037150.g ID=Lus10037150.BGIv1.0 annot-version=v1.0 ATGGTCGAGAACGGCGTCAACAACGGCAACGGGGACCACCGTCCCCTCGACGACGACGGCCGCCCCAAACGAACTGGAACCGTATGGACAGCAAGCGCCC ACATAATTACCGCCGTCATCGGCTCCGGCGTCTTGTCCCTCGCTTGGTCAACGGCCCAGCTTGGTTGGATTGCTGGCCCCACCGTTCTTTTTCTATTCTC CTTCGTCACTTACTATACCTCCGCCCTCCTCGCTGACTGTTACCGCTCCAGCGCCGGCGAGCGTAACTACACTTACATGGACGCCGTCAAATCCCATCTC GGCGATTTCCAGGAGAAGATTTGCGGATACATCCAGTACGCCAATCTCTTCGGCACCGCCATCGGATACACAATTGCTTCATCCATAAGCATGATGGCGG TGAAGAGAGCCAATTGTTTCCATAGAAGCGGAGGAAAAGATCCTTGCCACATGAACGCAAACCCTTACATGATTGCATTCGGAGTAGTTCAAATCATCTG CTCCCAGATCCCTGATTTCGACCAGCTGTCATGGCTCTCCATCGTCGCCTCCGTTATGTCTTTCACTTACTCCTCCATCGGATTGGGTCTTGGCGTTGCT AAAGTCATTGAGAACAAAACTGTTAAAGGAAGCCTCACCGGTGTTAGCATCGACGGCGCCGTCGTTTCCCGCTCCGACAAGGTTTGGCGTGTCTTCCAGT CCCTCGGCAACGTTGCTTTCGCCTACTCCTTCTCCAACATCCTCATCGAAATTCAGGACACTGTAAAATCGCCACCATCAGAATCAAAAACAATGAAGAG AGCATCACTGATCAGCATATTCATAACCACCATCTTCTACATGCTCTGCGGCTGCTTCGGATACGCAGCGTTCGGAGACCAATCTCACGACAACCTCCTA ACCGGATTCGGCTTCTACAACCCCTACTGGCTTCTAGACATAGGCAACGTGGCAATCGTCGTCCACCTCGTCGGGGCGTACCAAGTGTACGTCCAGCCCA TCTACGCATTCGTGGAGAAAATCGCCGTCAACAAGTTCCCTGAGAGCTACTTCATCACCAAGGAACTGAGAATCCCGCTCCCCAGTGGAGGAGACCGGCA CTACGATTTGAATCTCTTCAGACTCGTGTGGAGGACGGTGTTCGTGATCGTTACCACTCTGATTTCGATGCTCTTGCCTTTCTTCGGGGACATCGTGGGT TTGCTTGGCGCGTTGGGGTTCTGGCCGTTGACGGTTTATTTCCCGGTTGAGATGTACATTGCGCACAAGAAGATTCCGAAGTGGAGCACCGTGTGGGTTT CTCTTCAGATTCTTAGCGTAGCTTGTTTGATTATTTCGATCGTCGCTGCTGTGGGGTCGATTGTCGGGTTATCTGTCGATGTTAAGTCGGCGAAGCCCTT TCAGACTACTTACTAG
AA sequence Show only first row Show all	>Lus10037150 pacid=23152498 polypeptide=Lus10037150 locus=Lus10037150.g ID=Lus10037150.BGIv1.0 annot-version=v1.0 MVENGVNNGNGDHRPLDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWSTAQLGWIAGPTVLFLFSFVTYYTSALLADCYRSSAGERNYTYMDAVKSHL GDFQEKICGYIQYANLFGTAIGYTIASSISMMAVKRANCFHRSGGKDPCHMNANPYMIAFGVVQIICSQIPDFDQLSWLSIVASVMSFTYSSIGLGLGVA KVIENKTVKGSLTGVSIDGAVVSRSDKVWRVFQSLGNVAFAYSFSNILIEIQDTVKSPPSESKTMKRASLISIFITTIFYMLCGCFGYAAFGDQSHDNLL TGFGFYNPYWLLDIGNVAIVVHLVGAYQVYVQPIYAFVEKIAVNKFPESYFITKELRIPLPSGGDRHYDLNLFRLVWRTVFVIVTTLISMLLPFFGDIVG LLGALGFWPLTVYFPVEMYIAHKKIPKWSTVWVSLQILSVACLIISIVAAVGSIVGLSVDVKSAKPFQTTY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	0	1
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	1.7	0.7750
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	3.5	0.7325
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	4.5	0.7355
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	11.8	0.7090
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	16.9	0.7116
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	18.7	0.6789
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10040242 [exp]	25.3	0.6328
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	44.9	0.6546
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	46.6	0.6619
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	48.5	0.6591

Compare expression of checked genes

Lus10037150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.