Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69580 252 / 2e-82 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 204 / 2e-63 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 202 / 3e-62 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 191 / 3e-59 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 182 / 5e-56 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 171 / 9e-51 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G45580 153 / 7e-45 GARP Homeodomain-like superfamily protein (.1) AT3G12730 146 / 1e-42 GARP Homeodomain-like superfamily protein (.1) AT2G01060 142 / 1e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 136 / 4e-37 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036758 [exp] 537 / 0 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 216 / 1e-67 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 216 / 1e-67 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10016676 [exp] 191 / 7e-59 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 189 / 2e-58 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 172 / 2e-50 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 166 / 1e-49 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10001844 [exp] 170 / 3e-49 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10012142 [exp] 164 / 7e-49 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167901 [exp] 308 / 2e-104 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 305 / 1e-103 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 213 / 2e-66 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 211 / 2e-65 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 197 / 2e-61 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 194 / 3e-60 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 171 / 6e-51 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 166 / 1e-49 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.010G174100 [exp] 166 / 7e-49 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 158 / 1e-46 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037169 pacid=23152606 polypeptide=Lus10037169 locus=Lus10037169.g ID=Lus10037169.BGIv1.0 annot-version=v1.0 ATGAACTTGGTTCTGTCAACTGATGCAAAGCCTAGGCTGAAATGGACTGCTGATCTCCACAGCTTGTTCATCGATGCTGTCAATCGACTTGGCGGTCCGG AGAAGGCAACACCAAAGAGTCTGATGAGGGTGATGGGGATTCCTGGATTGACTTTGTACCATCTCAAGAGCCATTTGCAGAAGTATAGACTAGGAAAGAG CCAGCAATCCTTGACTAGCATTGAAACAAAACAAGAAATTCTCTTTGATGCAAAGAGTCAACTGATTCAAAGCAAGGAAATCAGTACTGATGGAAATAAC AAACCAATCAAAGAAAGCCTGCAGATTGCTCATGCTCTCCAAGTACAAATGGAAGTGCAGAGAAAACTCCACGAACAAATCGAGGTTCAGAAACATTTGC AGCTGAGAATAGAGGCTCAGGGAAAGTATCTACAGTCAGTACTGAACAAAGCACAGGAAACTCTGGCAGGGTATGGTTCATCTTCAGTTGGGATAGAGCT TGCAAAAGCTGAGCTCTCTAAACTGGTCTCCATGGTGAATTCCGGATGCACGAGTTCCTGTATCTCAGACCTCTCGGAAACAGAAGCAGGTTCGTCCAGC CCGGGTAGGAAACCGGTCAACAAGACCGCATTGTGCTCAGTGGAAAGCTCTTTGACATCAGCTGAAAGTTCAGATGAAATGGAACAAAAGTCAAATCATG GCACTTCAAACAATCAAGGGAAGAAAAGGAGGAATGGGAAGATTGCAGAGCAGCCAATGGCTAAGAGATTCAGAAGCTCTGAGATGTTAATAACCACAAT TGATCTGAACAGAAAGTGTGAAACCGACGTCATCGAGACGGGTCCAAGAACGATCGACTTGAACAGCAATGTAGTTTGA
AA sequence Show only first row Show all	>Lus10037169 pacid=23152606 polypeptide=Lus10037169 locus=Lus10037169.g ID=Lus10037169.BGIv1.0 annot-version=v1.0 MNLVLSTDAKPRLKWTADLHSLFIDAVNRLGGPEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQSLTSIETKQEILFDAKSQLIQSKEISTDGNN KPIKESLQIAHALQVQMEVQRKLHEQIEVQKHLQLRIEAQGKYLQSVLNKAQETLAGYGSSSVGIELAKAELSKLVSMVNSGCTSSCISDLSETEAGSSS PGRKPVNKTALCSVESSLTSAESSDEMEQKSNHGTSNNQGKKRRNGKIAEQPMAKRFRSSEMLITTIDLNRKCETDVIETGPRTIDLNSNVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	2.8	0.8182
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	9.5	0.7725
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	9.5	0.8141
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	10.0	0.7951
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	12.0	0.7640
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	12.7	0.7866
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	13.1	0.7614
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	13.2	0.7910
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	13.3	0.8003
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	13.7	0.7704

Compare expression of checked genes

Lus10037169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.