Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02820 167 / 2e-48 MYB ATMYB88 myb domain protein 88 (.1.2) AT1G14350 166 / 4e-48 MYB FLP, AtMYB124 FOUR LIPS, myb domain protein 124, Duplicated homeodomain-like superfamily protein (.1.2) AT3G27785 44 / 7e-05 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT4G37260 41 / 0.0005 MYB ATMYB73 myb domain protein 73 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036728 [exp] 472 / 1e-170 AT2G02820 166 / 2e-48 myb domain protein 88 (.1.2) Lus10030494 [exp] 225 / 1e-70 AT2G02820 457 / 4e-158 myb domain protein 88 (.1.2) Lus10012847 [exp] 157 / 1e-44 AT2G02820 447 / 3e-154 myb domain protein 88 (.1.2) Lus10008010 [exp] 44 / 8e-05 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10011687 [exp] 41 / 0.0009 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148400 [exp] 226 / 7e-71 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.010G093000 [exp] 214 / 3e-66 AT2G02820 470 / 4e-163 myb domain protein 88 (.1.2) Potri.009G096000 [exp] 40 / 0.0006 AT4G37260 222 / 1e-71 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037202 pacid=23152631 polypeptide=Lus10037202 locus=Lus10037202.g ID=Lus10037202.BGIv1.0 annot-version=v1.0 ATGGAAGATAAGAAGAGGAAGAAGATCAATGGCGGTGGGAGTGGAAGTGAGGAATCCAGTAAGAAGAAGGAGAGACATATTGTCTCATGGACGGATGAGG AAGATGATATACTTCGTCAGCAGATAAGCTTACATGGAACTGAGAACTGGGCGATCATAGCGTCTAAGTTTAATGATAAAACCACTAGGCAGTGTAGAAG AAGTTGTTCGGAAATACTCCGGGACTTCCTTGCTCACTTACTCATTAAACTTGGCAAGCAGGTTCTCCAAGATTTCCTGAAAATGGGCAAAGATGACGAG TTACCTAGTTCTGCAATTTCCGACATTGATTTCCAACTCGAAGATTTCAAAGACTTGATAGAAGATTTAAGGAACAGCAGCGATGGAAGTCATCTATCTT GGAGGCAGCCAGCTCTTTATGAAGCATCTCAAGCTAGCTCGGAATTCAGCACAGGGTCAAGTTTAATGCCATATCAAGCACCGGATGGTGCAAGTGACTT GCAAAGTGTCCACATTGCAGGACAAAAGGGCATAGGCGAATGTGACAAAGAAATTATCTCCAGAGAAAACATAGCGGAAGGGGGTCTGTTTCAATCCTTT GACGAGCAAACAAACGAAGACACAGTTGTTTCGTGTTCATCAAGTACAGAGTTCGGCTCCCCTTGTCAGGTTACTCCAATCTTCAGATCTTTGGGAGCAG GAGTACCTAGCCCCCATTTTTCTGAAAGTGAACGGAGATTTCTACTAAAAACTCTTGGAGTGGAGTCTCCATTTCCGAATCCAAGCATCGACTCCTCTCA ACCACCTCCCTGCCAAAGGGTCTTGCTCAAAAGCTTATGA
AA sequence Show only first row Show all	>Lus10037202 pacid=23152631 polypeptide=Lus10037202 locus=Lus10037202.g ID=Lus10037202.BGIv1.0 annot-version=v1.0 MEDKKRKKINGGGSGSEESSKKKERHIVSWTDEEDDILRQQISLHGTENWAIIASKFNDKTTRQCRRSCSEILRDFLAHLLIKLGKQVLQDFLKMGKDDE LPSSAISDIDFQLEDFKDLIEDLRNSSDGSHLSWRQPALYEASQASSEFSTGSSLMPYQAPDGASDLQSVHIAGQKGIGECDKEIISRENIAEGGLFQSF DEQTNEDTVVSCSSSTEFGSPCQVTPIFRSLGAGVPSPHFSESERRFLLKTLGVESPFPNPSIDSSQPPPCQRVLLKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10037202 [exp]	0	1
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	1.4	0.9636
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10036728 [exp]	2.0	0.9529
AT5G02640			unknown protein		Lus10025282 [exp]	6.5	0.9557
AT1G21510			unknown protein		Lus10018955 [exp]	6.9	0.9526
AT5G61340			unknown protein		Lus10034727 [exp]	9.6	0.9590
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	14.0	0.9527
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	21.0	0.9473
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	23.4	0.9506
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	23.7	0.9514
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	24.8	0.9512

Compare expression of checked genes

Lus10037202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.