Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10010 555 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 543 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 523 / 0 AAP6 amino acid permease 6 (.1) AT5G09220 516 / 0 AAP2 amino acid permease 2 (.1) AT1G44100 504 / 1e-176 AAP5 amino acid permease 5 (.1) AT5G63850 503 / 3e-176 AAP4 amino acid permease 4 (.1) AT1G77380 491 / 2e-171 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 402 / 8e-137 AAP7 amino acid permease 7 (.1.2) AT5G40780 172 / 2e-48 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 163 / 4e-45 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035663 [exp] 909 / 0 AT1G10010 569 / 0.0 amino acid permease 8 (.1) Lus10033760 [exp] 728 / 0 AT1G10010 506 / 5e-178 amino acid permease 8 (.1) Lus10033759 [exp] 632 / 0 AT1G58360 533 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Lus10012444 [exp] 629 / 0 AT1G10010 535 / 0.0 amino acid permease 8 (.1) Lus10007235 [exp] 533 / 0 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 514 / 1e-180 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 512 / 9e-180 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10018852 [exp] 503 / 5e-176 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 496 / 2e-173 AT1G77380 680 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085000 [exp] 585 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.002G112100 [exp] 549 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.005G068900 [exp] 534 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 530 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 509 / 5e-178 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.006G236000 [exp] 501 / 3e-175 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.002G079500 [exp] 496 / 2e-173 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 496 / 1e-171 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 483 / 2e-168 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 483 / 5e-168 AT1G77380 765 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037248 pacid=23152407 polypeptide=Lus10037248 locus=Lus10037248.g ID=Lus10037248.BGIv1.0 annot-version=v1.0 ATGGTGGTGGAGTCAATAAGTCCGGTTAAGAGCTTCGAATTCGATTCCTACGATCACGACACTGATGATGATGGACACCCCAAACGCAAAGGGACGATGA TGACGGCAAGTGCACACATAATAACATCGGTAATAGGATCAGGGGTGCTATCATTGGCATGGGCAACCGCTCAATTGGGATGGATAGCTGGACCTGCTAT ACTCTTTGTGTTTGCTCTAATTACTTGGTACACCGCTCAGCTTTTATGCGACTGTTATCGTTGCCCCGGCCCACAGTTCGGCACTCGTTCCTACACTTAC TCTGGCGCTGTCAGAGCCCATCTAGGTGGGATCAGGTCCAAGTTTTGTGGAGTATTTCAATTCATATATCTTCTAGGAACTGCCATTGGATACACCATAG CTACACCCATCAGCATGGCTGCCATCCAGAGATCGAACTGCTTTTACCAAAAGGGGCACGAAGCAGGGTGTCACACTTCCAACAACAAGTTCGTCATAAT ATTTGGAATCATCCAAATATTATTGAGCCAGCTCCCCGATTTTCACAACCTCGCCTTCATCTCCGTCATCGCGGCCATAATGTCCTTCGCCTACTCCTTT ATCGGCCTTGGCCTTTGCATCGCCACCATCATAAAGAATCATGTGCATGAGAGCACGGGATTAACAGGGGTGAAGATTGGGGAAGGAGGCGTCACGAGAT CAATGAAGGTGTTCAACGTTTTACAGGCCATAGGGGATATAGCATTTGCCTACAGCTACGCCCCTATCCTTCTCGAAATTGAGGACACACTAAGATCAAG TCCGCCGGAGAACGAGGTGATGAAGAAGGCATCAACGATGGGCATAGCAGTTACGACATCGTTTTACTGCCTGTGCGGCGTACTCGGGTACGCTGCCTTC GGAAACGATGCTCCGGGGAACTTGCTAACCGGGTTCGGCTTCTACGACCCCTTCTGGCTCGTGGACATTGCCAACCTCTTCGTGGTGATCCACCTCATAG GCGCGTACCAGGTATTCATCCAGCCGACTTTCCAAATAGTGGAGCAATGGTGCAACAGGAAATGGCCGGACAGCGGCTTCTTGAGAAACGAGTACCCAGT AATGGGCGGGAAGTTCAGGCTGAACCCCTTCAGGCTAGTATGGAGAACCTTGTACGTTGTGGGGACGTGCGTGGTCGGGATGCTGTTCCCGTTCTTCAAC AGCGTGCTGGGGTTGCTCGGTGCGTTTGCGTTTTGGCCGCTCACGCTCTATTTCCCGATCGAGATGTACAAGAAGCAGGCTGGGATTAAGAGGTTTAGTC CGACGTGGATGTGGGTCACCTTTTTGAGTGGGGTTTGTTTGCTTGTGTCGATACTCGCCGCCGTTGGATCTGTTGATGGCATCATCAGTTCGCTTGAGAA ATACAAGCCTTTTAAGTTCGAGACTTGA
AA sequence Show only first row Show all	>Lus10037248 pacid=23152407 polypeptide=Lus10037248 locus=Lus10037248.g ID=Lus10037248.BGIv1.0 annot-version=v1.0 MVVESISPVKSFEFDSYDHDTDDDGHPKRKGTMMTASAHIITSVIGSGVLSLAWATAQLGWIAGPAILFVFALITWYTAQLLCDCYRCPGPQFGTRSYTY SGAVRAHLGGIRSKFCGVFQFIYLLGTAIGYTIATPISMAAIQRSNCFYQKGHEAGCHTSNNKFVIIFGIIQILLSQLPDFHNLAFISVIAAIMSFAYSF IGLGLCIATIIKNHVHESTGLTGVKIGEGGVTRSMKVFNVLQAIGDIAFAYSYAPILLEIEDTLRSSPPENEVMKKASTMGIAVTTSFYCLCGVLGYAAF GNDAPGNLLTGFGFYDPFWLVDIANLFVVIHLIGAYQVFIQPTFQIVEQWCNRKWPDSGFLRNEYPVMGGKFRLNPFRLVWRTLYVVGTCVVGMLFPFFN SVLGLLGAFAFWPLTLYFPIEMYKKQAGIKRFSPTWMWVTFLSGVCLLVSILAAVGSVDGIISSLEKYKPFKFET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	0	1
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	2.0	0.9089
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	3.5	0.9461
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	5.7	0.8638
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	5.8	0.9321
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	6.2	0.8379
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	9.9	0.9189
					Lus10003693 [exp]	11.1	0.7931
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	11.3	0.7894
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	13.2	0.7365
					Lus10040397 [exp]	14.5	0.9075

Compare expression of checked genes

Lus10037248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.