Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45380 1035 / 0 ATDUR3 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033882 [exp] 911 / 0 AT5G45380 790 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10003564 [exp] 850 / 0 AT5G45380 778 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10003565 [exp] 198 / 7e-60 AT5G45380 169 / 9e-50 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1) Lus10000112 [exp] 174 / 2e-51 AT5G45380 152 / 4e-44 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104000 [exp] 1131 / 0 AT5G45380 1028 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00474 [flax] [poplar] SSF Sodium:solute symporter family
Representative CDS sequence Show only first row Show all	>Lus10037255 pacid=23152434 polypeptide=Lus10037255 locus=Lus10037255.g ID=Lus10037255.BGIv1.0 annot-version=v1.0 ATGGAGTCAACTCAGGCAAAGTGTCCGCCTTTCGGGTTCTCGGCCAAGTACTACACCGATGGCGGCGGCGGATGCGCGAGGCAGAGCAGCTTCTTTGAGG GGAAAGCAATACTGGGTCAAGGAGTAGGCTACTCTGTCATCCTTGGATTCGGCGCCTTCTTCGCTATCTTCACTTCTTTTCTGGTGTGGGTGGAGAAAAG ATACGTAGGGTCGCGCCACACTTCAGAATGGTTCAACACCGCCGGCAGAAATGTCAAAACTGGCCTTATTGCCAGTGTTATTGTCTCCCAGTGGACATGG GCAGCTACAATATTGCAAAGCTCCAATGTAGCTTGGGAATATGGGGTCAGTGGACCATTCTGGTATGCCAGTGGGGCTACCATTCAGGTTCTGCTGTTTG GGGTAATTGCCATAGAGATCAAGAGAAAGGCTCCACATGCACATACAGTTTGTGAGATTGTCAAAGCTCGATGGGGAACCAATGCCCACGTTGTGTTCCT CTTCTTCTGCTTCCTAACCAACATCATCGTCACGGCAATGCTGCTCCTCGGAGGCTCAGCAGTCGTCAATGCACTCACAGGGGTCAACATCTACGCAGCC AGCTTCCTCATCCCCCTTGGTGTTATTGTCTACACTCTAGCTGGTGGCCTCAAAGCCACTTTCTTGGCTAGCTACATCCACTCTGTCATTGTTCATGTGG CTCTGGTCGTATTTGTCTACTTAGTCTACACAGCTAGCAGCGAGCTTGGCAGCCCGGGAGTTGTGTATCGTCGCTTGTTAGATGTTACGAGCAAATCAAG AGTCTGCCAAGAGCCAATCTCTCACACCGGCCAATCCTGCGGCCCTGTCAAAGGAAACTACAACGGCTCTTATCTTACCATGCTCAGTCCTGGAGGCCTT GTGTTTGGTATCATCAATATTGTTGGCAACTTCGGCACAGTTTTCGTCGACAATGGGTATTGGGTGAGTGCCATAGCTGCAAGGCCTTCCTCAACTCACA AGGGCTATTTGTTGGGAGGTTTAGTATGGTTTGCTGTCCCTTTCTCTCTGGCAACTTCCCTAGGGCTGGGAGCTCTTGCACTGGACCTCCCCATAACTCA GGCAGAAGCGAATCATGGACTTGTTCCTGCTGCCACTGCTACTGCCTTGATGGGGAAATCAGGATCTGTTCTACTTCTCACCATGCTTTTCATGGCTGTG ACTTCTGCTGGATCATCTGAGCTAATTGCAGTGTCTTCATTGTGCACTTATGATATCTACCGCACCTACATTAACCCGAATGCAAGTGGGAAAAAGATCC TACTAGTATCAAGGGCAGTGGTGTTATGTTTTGGATGCTTCATGGGTTTACTGGCTGTAATTCTAAACATGGCTGGAGTCTCATTAGGCTGGATGTACTT AGCCATGGGAGTGTTAATTGGCTCAGCTGTCATCCCAATTGCTTTCATGCTCCTTTGGAGGAAAGCCAATGCAATAGGTGCCATACTAGGAACTGTAATA GGCTGCGTTCTTGGGATAACCACTTGGATTTCAGTTACGAGCATCGAGTATGGACGGGTTGATCTGGACACAACGGGGAGAAATGCCCCCATGCTGGCTG GTAACCTTGTCTCCATACTAACCGGAGGAGCTATCCATGCTGTGTGTAGTCTGATATGGCCTCAGAACTATGAATGGGATACCACAAGAAAGATCACAAC CGTTGAGAAGGACATTAGTGAAGATCTTCCGGCTGAAGAGTACAAAGAAGAGAAGCTCAAGAAGGCCAAAGCTTGGATTGTCAAGTGGGGGATTGCTTTC ACTCTTGTCATCGTTGTATTGTGGCCTCTTCTCAGCCTTCCAGCCAAGGAGTTCAACTTGGGGTACTTCACTTTCTGGGCTGTGATTGCAATAGCATGGG GCACCGTTGGATCGGCAGTGATTATCGCTCTCCCGTTGATCGAAAGTTGGGATACCATCCGAAATGTGTTGCTTGGGATGTTTACAAACGACAGGCTGAT GGAGAAACTTGAAAAGATTGACACGAAGCTGCAGACTATCATACTGACGATTCCTGAAGCAGAAAAATTGTACCTGCTTGAGAATGAGAAGGATGATAAT AAAGCTAAGAAGAGACGTGAGTCTCCATCAGAAGTTTAG
AA sequence Show only first row Show all	>Lus10037255 pacid=23152434 polypeptide=Lus10037255 locus=Lus10037255.g ID=Lus10037255.BGIv1.0 annot-version=v1.0 MESTQAKCPPFGFSAKYYTDGGGGCARQSSFFEGKAILGQGVGYSVILGFGAFFAIFTSFLVWVEKRYVGSRHTSEWFNTAGRNVKTGLIASVIVSQWTW AATILQSSNVAWEYGVSGPFWYASGATIQVLLFGVIAIEIKRKAPHAHTVCEIVKARWGTNAHVVFLFFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAA SFLIPLGVIVYTLAGGLKATFLASYIHSVIVHVALVVFVYLVYTASSELGSPGVVYRRLLDVTSKSRVCQEPISHTGQSCGPVKGNYNGSYLTMLSPGGL VFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPITQAEANHGLVPAATATALMGKSGSVLLLTMLFMAV TSAGSSELIAVSSLCTYDIYRTYINPNASGKKILLVSRAVVLCFGCFMGLLAVILNMAGVSLGWMYLAMGVLIGSAVIPIAFMLLWRKANAIGAILGTVI GCVLGITTWISVTSIEYGRVDLDTTGRNAPMLAGNLVSILTGGAIHAVCSLIWPQNYEWDTTRKITTVEKDISEDLPAEEYKEEKLKKAKAWIVKWGIAF TLVIVVLWPLLSLPAKEFNLGYFTFWAVIAIAWGTVGSAVIIALPLIESWDTIRNVLLGMFTNDRLMEKLEKIDTKLQTIILTIPEAEKLYLLENEKDDN KAKKRRESPSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	2.8	0.8264
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	8.5	0.8219
AT5G59050			unknown protein		Lus10001433 [exp]	8.5	0.8061
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	9.3	0.7363
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	11.4	0.8209
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	16.3	0.6903
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	17.4	0.7767
AT3G07760			Sterile alpha motif (SAM) doma...		Lus10001743 [exp]	17.5	0.7851
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	17.7	0.7522
AT5G55060			unknown protein		Lus10043118 [exp]	18.2	0.7738

Compare expression of checked genes

Lus10037255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.