Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 310 / 6e-101 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 172 / 1e-48 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 171 / 4e-48 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 165 / 2e-46 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT2G01060 162 / 2e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 147 / 1e-39 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 140 / 9e-37 GARP myb-like HTH transcriptional regulator family protein (.1) AT4G13640 134 / 1e-35 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 135 / 5e-35 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 134 / 8e-35 GARP Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035705 [exp] 694 / 0 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 182 / 4e-52 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 172 / 3e-48 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 170 / 3e-47 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10032778 [exp] 168 / 8e-47 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022885 [exp] 163 / 1e-44 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10029607 [exp] 158 / 1e-42 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10039124 [exp] 153 / 1e-42 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10040569 [exp] 148 / 5e-40 AT3G13040 157 / 7e-44 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000700 [exp] 399 / 5e-136 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 365 / 4e-122 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 176 / 1e-49 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G048000 [exp] 174 / 1e-48 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.018G151400 [exp] 166 / 3e-46 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.002G257800 [exp] 166 / 2e-45 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.006G000800 [exp] 161 / 4e-45 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G191000 [exp] 162 / 9e-45 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 159 / 1e-44 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 146 / 4e-39 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037296 pacid=23152367 polypeptide=Lus10037296 locus=Lus10037296.g ID=Lus10037296.BGIv1.0 annot-version=v1.0 ATGAAGAGCCAGAGTGTTGTATCCGTTATGAAAAGTGAATCTCCTGGACCATTCTGCGCATCCCTATCACCAATTCACAACTTCTTCGGCGTCGAATCTG ATGGAAACAACAAGAGTACACTCACCAGTGATCAATGCTCATCATCATCTTCACGGCCATCGCCTTTCATACGATCCGATTCCCTCAACTCTTCCAATAG CTTGCGGTTATCCACCTCAGCAGCAGAACATGAGAAATGTTCCGGTCCAGATAGCTCTCTTTCGTATGGCTCTCAAGTTTCCAAGGGGGCCACATTCCAG CGCTCTTCTGTGTTCTGCACCAGTTTGTACTCATCGTCTTCGTTAGGAAAGCAGCTTCCTTTTCTTCCACATCCTCCTCCTCCTACTGCTGCCTGCAGCT CCCACCAATCCTTTTCAGCAGTTGTTGCCTCGGCGAAATCTCCACCAATTTTTAGTGATGACATGATGAGCACCAACAGCACCTATGACGACGACCAATC TGATGCTCTTATGAAGAATTTCCTTAATCTGGCAGGAGATGCTTCTGAAGGCAGTTTTCATGGTGGTATGAGCTGTGCCATTGATTCTCTGGCATTCTCA GAGCACTTGGAACTGCAGTTTCTGACCGATGAACTTGACATGTCGATTACTGACCATGGTGAAAATCCAAGGCTTGATGAAATCTATGGAACACCTGAAA CCTTACCAGAAAAACCAGTCACGGGATCGACGTCAGATGAAAACCACGCCTCTGCTGCGCCACCTGTCGATGCGCTTTCTGGTCAACCCTCTCCCACGGG TGCTGCTGCTGCTCACAAGCCAAGAATGAGATGGACACCTGAGCTGCATGAATCTTTTCTAGCAGCTGTTAACAAGCTTGATGGAGCTGAAAAGGCTACT CCAAAGGGCGTACTAAAGCTCATGAATGTTGAAGGCTTGACAATTTATCATGTGAAAAGCCACTTACAGAAATACCGCATGGCGAAGTATTTACCAGAGA GAAAAGAAGAGAAGAAGAGTTCCAGTTCGGAAGAAAAGAAACCAACTTTTAGCAGCCTTGAATTTGATGGGAGGAGAAAAGGGAACCTTCAAATATCAGA GGCATTACGTATGCAAATGGAAGTCCAGAAGCAGCTGCACGAACAGCTTGAGGTGCAAAAAGCACTTCAGGTACGCATAGAAGAACACGCAAGATACCTA GAGAAGATGCTGGAGGAGCAGCAGAAAGCTGGGACAGCCTTAATGTCTCCGAAAAGCCTCAATGTTCCATCTCAAGAGTCCAAACCAGCTTCTGCCGAGT CAGCTTCGAAAGCTGACTCGGCATCAACGTCATCCCCTTATCCGTTGACAGGCGGAGAAGTTGGAGATGGTAATAAGCGAGAGTGCAAGAAAAGAATCCG CGTGGAAGAGGAAGAAGAAAAAAGGGATGTTGAGGTTGGAAATGTAGTGGTATAA
AA sequence Show only first row Show all	>Lus10037296 pacid=23152367 polypeptide=Lus10037296 locus=Lus10037296.g ID=Lus10037296.BGIv1.0 annot-version=v1.0 MKSQSVVSVMKSESPGPFCASLSPIHNFFGVESDGNNKSTLTSDQCSSSSSRPSPFIRSDSLNSSNSLRLSTSAAEHEKCSGPDSSLSYGSQVSKGATFQ RSSVFCTSLYSSSSLGKQLPFLPHPPPPTAACSSHQSFSAVVASAKSPPIFSDDMMSTNSTYDDDQSDALMKNFLNLAGDASEGSFHGGMSCAIDSLAFS EHLELQFLTDELDMSITDHGENPRLDEIYGTPETLPEKPVTGSTSDENHASAAPPVDALSGQPSPTGAAAAHKPRMRWTPELHESFLAAVNKLDGAEKAT PKGVLKLMNVEGLTIYHVKSHLQKYRMAKYLPERKEEKKSSSSEEKKPTFSSLEFDGRRKGNLQISEALRMQMEVQKQLHEQLEVQKALQVRIEEHARYL EKMLEEQQKAGTALMSPKSLNVPSQESKPASAESASKADSASTSSPYPLTGGEVGDGNKRECKKRIRVEEEEEKRDVEVGNVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	0	1
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	2.4	0.8317
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	4.8	0.8370
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10035662 [exp]	7.1	0.7288
AT1G25570			Di-glucose binding protein wit...		Lus10041488 [exp]	7.1	0.7923
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	9.9	0.7480
AT4G27570			UDP-Glycosyltransferase superf...		Lus10001858 [exp]	11.0	0.7873
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	11.5	0.7659
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10012925 [exp]	12.7	0.7251
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10024315 [exp]	18.8	0.6898
AT3G25680			unknown protein		Lus10021714 [exp]	19.2	0.7568

Compare expression of checked genes

Lus10037296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.