Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59710 248 / 4e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 170 / 3e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 162 / 2e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G01800 127 / 6e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G61220 125 / 3e-34 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 122 / 2e-33 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50130 49 / 2e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50700 45 / 2e-05 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 45 / 2e-05 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT1G63380 41 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035736 [exp] 389 / 1e-137 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 294 / 7e-100 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032524 [exp] 148 / 9e-43 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 147 / 3e-42 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014688 [exp] 144 / 3e-41 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032525 [exp] 142 / 2e-40 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014689 [exp] 142 / 5e-39 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 138 / 5e-39 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 133 / 4e-37 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127700 [exp] 277 / 2e-93 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G110200 [exp] 157 / 1e-46 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G108400 [exp] 154 / 2e-45 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G080000 [exp] 133 / 2e-37 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 127 / 6e-35 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 125 / 2e-34 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 125 / 2e-34 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 124 / 6e-34 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 124 / 7e-34 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 121 / 9e-33 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10037320 pacid=23152315 polypeptide=Lus10037320 locus=Lus10037320.g ID=Lus10037320.BGIv1.0 annot-version=v1.0 ATGCTGAAGAAGCTGGCGGAGCAGGGCCTAACCGTTGTCTTAACGGCCAGGGATGTCGAAAGAGGGAACCAGGCCGTTGAGACGCTGAGATCCCGTCATG GTCTCCACGGCGTCGTCCACTTCCGTCACCTCGATGTTTCAGATCCTCGTTCCATCGAAACCTTCGTTTCCCAATTCCGTCAGGATTTCAGTTTCTTGGA CATTCTGGTGAACAATGCAGCAGTATCATTCAACCAGATAAACTCAGTGGATCATGCAGAGACAGTACTGAAAACCAACTTCTACGGTCCAAAGCTACTA ATAGAATCCCTCCTCCCTTTCTTCCGTCGATCTTCTTCGCACAGCCGCATCCTCAACCTCAGCTCCAGGCTCGGCGCCGTCAACAAAGTGAGGAACATGG GATTGAAGGCGATGCTCGAAAGCGACAGGACGTTGACGGAGGAGGAGATAGAGGAGAAAGTTGTGAGGAAGTTTCTTAACGACGTTAAGGAAGGGACGTG GGAAGGTCAAGGGTGGCCCGCTTTGTGGACCGACTACGCCGTCTCCAAACTGGCCCTCAACGCCTACTCCAAGATTTTAGCATGCCGATATTCCGGCCGG GGGTTGAGTGTCAACTGCTTCTGCCCTGGATTCACTCAGACTTCCATGACCGGCGGTAACCGGACTCATCGCGCCGACGACGCTCCCTTGCTTTGCTTCC TCCTCACTTGCTCACCTCCAGCAACTTCTACCTCGGGTTTCTGCAATCGCGGCGTTAATCGTTCCAAGCTTTAG
AA sequence Show only first row Show all	>Lus10037320 pacid=23152315 polypeptide=Lus10037320 locus=Lus10037320.g ID=Lus10037320.BGIv1.0 annot-version=v1.0 MLKKLAEQGLTVVLTARDVERGNQAVETLRSRHGLHGVVHFRHLDVSDPRSIETFVSQFRQDFSFLDILVNNAAVSFNQINSVDHAETVLKTNFYGPKLL IESLLPFFRRSSSHSRILNLSSRLGAVNKVRNMGLKAMLESDRTLTEEEIEEKVVRKFLNDVKEGTWEGQGWPALWTDYAVSKLALNAYSKILACRYSGR GLSVNCFCPGFTQTSMTGGNRTHRADDAPLLCFLLTCSPPATSTSGFCNRGVNRSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10037320 [exp]	0	1
AT1G76750			Protein of unknown function (D...		Lus10025591 [exp]	29.8	0.5752
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	31.1	0.6508
					Lus10040955 [exp]	36.4	0.6438
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007202 [exp]	40.3	0.5903
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	46.4	0.6311
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	52.5	0.6186
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	62.6	0.6076
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	64.5	0.6144
					Lus10019810 [exp]	68.7	0.6269
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	89.4	0.6080

Compare expression of checked genes

Lus10037320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.