Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 1410 / 0 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 1406 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1369 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 443 / 9e-144 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 404 / 3e-131 CDC48B cell division cycle 48B (.1) AT1G03000 291 / 2e-85 PEX6 peroxin 6 (.1) AT3G56690 272 / 4e-78 CIP111 Cam interacting protein 111 (.1) AT5G08470 253 / 5e-71 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 231 / 3e-63 cell division cycle protein 48-related / CDC48-related (.1) AT4G29040 215 / 7e-62 RPT2A regulatory particle AAA-ATPase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021441 [exp] 1435 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 1427 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1412 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1400 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1304 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 796 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 447 / 3e-142 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10002639 [exp] 451 / 4e-141 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10039722 [exp] 434 / 4e-140 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091600 [exp] 1423 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 1423 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1405 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1389 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1274 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 449 / 5e-146 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 408 / 2e-132 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 286 / 3e-83 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 267 / 1e-75 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 265 / 4e-75 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [flax] [poplar] AcetylDC-like PF02359 [flax] [poplar] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [flax] [poplar] Cdc48_2-like PF02933 [flax] [poplar] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10037385 pacid=23152394 polypeptide=Lus10037385 locus=Lus10037385.g ID=Lus10037385.BGIv1.0 annot-version=v1.0 ATGGCGGACAAGGCTGCAGAAACTTCCCAAGTGAAACAGGGGAAGAAGGACTTCTCCACCGCGATTTTGGAGCGTAAGAAGTCTCCCAATCGCCTGGTCG TTGACGAGGCTGTCAACGATGACAATTCTGTCGTCTCCATGCACCCTGACACCATGGAGCAGCTCCACCTCTTTCGCGGCGATACTCTTCTCATCAAGGG AAAGAAAAGGAAGGATACTGTAGGAATTGCTCTGGCTGATCAGACTTGCGAGCCGGCCAAGATCAGAATGAACAAGGTGATTAGGTCAAACTTGAGAGTG CGACTTGGAGATGTCGTTTCCGTACACCAATGCCCAGATGTTAAATACGGGAAGCGCGTTCACATACTGCCAATTGACGACACCATCGAAGGCGTCACTG GAAATCTCTTTGATGCATTTCTCAAGCCTTATTTCCTGGAGGCATATCGGCCTGTAAGAAAATCTGATCTCTTCCTTGTTAGAGGTGGCATGAGAAGTGT TGAATTCAAGGTCATTGAAACTGACCCAGGGGACTACTGTGTGGTGGCACCAGATACCGAAATTTTCTGTGAGGGCGAACCGGTTCGGAGGGAGGAGGAA GAGAGGTTGGACGAAGTAGGTTACGACGATGTTGGTGGAGTCCGTAAGCAGATGGCGCAGATTCGCGAGCTGGTAGAGCTTCCACTAAGGCATCCGCAGC TCTTCAAATCAATCGGTGTCAAGCCACCAAAGGGCATTTTGCTCTATGGACCTCCTGGTTCTGGAAAAACCTTGATAGCTAGAGCTGTGGCGAATGAAAC CGGTGCGTTCTTCTTCTGTATCAATGGTCCCGAGATCATGTCGAAACTGGCTGGTGAGAGTGAGAGCAATCTCAGGAAGGCATTTGAAGAGGCTGAGAAG AATGCTCCTTCAATCATTTTTATTGATGAGCTTGATTCCATTGCACCTAAGAGGGAGAAGACACACGGTGAAGTCGAGAGGCGTATTGTCTCGCAATTGT TGACTCTTATGGACGGACTTAAATCTCGTGCGCATGTGATGGTTATCGGTGCTACGAATCGGCCGAACAGCATTGATCCGGCTCTGAGACGGTTTGGGAG GTTTGATCGAGAGATAGATATTGGTGTTCCGGATGAGATTGGACGGCTTGAAGTCCTACGCATTCATACCAAGAATATGAAGCTCTCTGACGATGTTGAC CTGGAAAGGATTTCGAAAGACACTCATGGATTTGTTGGTGCTGACCTTGCTGCACTATGTACTGAAGCTGCACTTCAGTGCATCAGAGAAAAGATGGATG TTATTGATCTAGAGGATGACACCATTGATGCCGAGATATTGAATTCGATGTCGGTTACCAATGAGCACTTCCAAACTGCTCTTGGAACAAGCAATCCATC TGCTTTGCGAGAAACTGTTGTTGAAGTACCAAATGTTAAGTGGGAGGATATTGGTGGACTTGAGAATGTTAAGCGGGAACTTCAGGAGACTGTTCAATAT CCTGTGGAGCATCCTGAGAAATTCGAGAAGTTTGGCATGTCACCTTCAAAGGGAGTTTTGTTTTTCGGCCCTCCGGGGTGTGGGAAGACACTCTTAGCCA AAGCGATCGCAAACGAATGCCAAGCAAACTTCATTAGTGTCAAAGGTCCCGAACTCCTCACGATGTGGTTCGGCGAGAGCGAAGCAAATGTTCGGGAAAT TTTCGACAAGGCTAGACAGTCCGCACCCTGCGTCCTTTTCTTTGACGAGCTCGACTCTATTGCCACTCAGAGAGGGAACAGTGTTGGTGATGCTGGTGGA GCGGCTGATCGTGTTTTGAACCAACTTCTGACTGAAATGGACGGTATGTCAGCAAAGAAGACCGTTTTCATAATCGGCGCAACAAACAGACCCGACATCA TCGATCCAGCTCTCCTGAGGCCTGGGCGTCTTGACCAATTGATTTATATCCCTCTTCCAGACGAGGATTCACGTCACAACATTTTCAAAGCCTGCTTGAG GAAATCTCCCGTGGCGAAGGATGTCGACTTGAGAGCATTGGCCAAATACACGCAAGGGTTCAGTGGCGCTGATATCACTGAGATATGCCAGCGAGCTTGC AAGTATGGCATAAGGGAGAATATAGAGAAGGATATTGAAAGGGAAAGGAGGAGGAAGGACACCCCGGAAGCAATGGAGGAGGACATGGACGACGAGGTTG CAGAGATCAAAGCTGCACATTTCGAAGAGTCGATGAAGTATGCTCGAAGGAGTGTGAGTGACGTGGATATCCGCAAGTACCAGACGTTTGCTCAGACATT GCAGCAGTCTAGAGGTGTAGGATCAGAGTTCAGGTTTTCGGAATCTCGAACCGGGGTGGCTGCTGCGGCTGATCCGTTCTCAACTTCGGCTGGTGGAGCT GATGAAGATGATTTGTACAGTTAA
AA sequence Show only first row Show all	>Lus10037385 pacid=23152394 polypeptide=Lus10037385 locus=Lus10037385.g ID=Lus10037385.BGIv1.0 annot-version=v1.0 MADKAAETSQVKQGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMHPDTMEQLHLFRGDTLLIKGKKRKDTVGIALADQTCEPAKIRMNKVIRSNLRV RLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKSDLFLVRGGMRSVEFKVIETDPGDYCVVAPDTEIFCEGEPVRREEE ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVMVIGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVD LERISKDTHGFVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMSVTNEHFQTALGTSNPSALRETVVEVPNVKWEDIGGLENVKRELQETVQY PVEHPEKFEKFGMSPSKGVLFFGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGG AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNIFKACLRKSPVAKDVDLRALAKYTQGFSGADITEICQRAC KYGIRENIEKDIERERRRKDTPEAMEEDMDDEVAEIKAAHFEESMKYARRSVSDVDIRKYQTFAQTLQQSRGVGSEFRFSESRTGVAAAADPFSTSAGGA DEDDLYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10037385 [exp]	0	1
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	5.4	0.7413
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	6.9	0.7274
AT2G26850			F-box family protein (.1)		Lus10036444 [exp]	8.7	0.7043
					Lus10028027 [exp]	10.2	0.6966
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	13.7	0.6840
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	14.8	0.6632
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	17.5	0.6924
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	23.1	0.6463
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	23.9	0.6463
					Lus10035508 [exp]	24.7	0.6463

Compare expression of checked genes

Lus10037385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.