Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 366 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 327 / 2e-92 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 305 / 1e-85 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 303 / 9e-85 transmembrane receptors;ATP binding (.1.2) AT5G17680 292 / 2e-81 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G31540 268 / 7e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46260 274 / 1e-75 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 271 / 4e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 270 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 270 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020238 [exp] 1469 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 1430 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 1343 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042714 [exp] 1331 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 1131 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10029628 [exp] 1071 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10010574 [exp] 1026 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 993 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004911 [exp] 972 / 0 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 423 / 7e-129 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 416 / 3e-126 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 414 / 4e-125 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 407 / 1e-124 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 407 / 8e-123 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 404 / 2e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 397 / 3e-121 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 400 / 1e-120 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 400 / 3e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 394 / 7e-120 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10037406 pacid=23152620 polypeptide=Lus10037406 locus=Lus10037406.g ID=Lus10037406.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGGAACATGTGCTCTACCAAAGGAATAACAGTCTCCAATGCTTATTCACAATCTGAAACATCAGCCCCAGAACTGCAATCTGTCACCAGTA CTTTAGAGTACGAGGTTTTCTTGAGCTTTAGAGGGCCTGATGTCCGCAAAAGCTTTGCTGACTTTCTCTACAACTATTTGGTTCGTTCCAAAATCCGCGC CTTTAGGGATGAAGAAGAGCTTCAGAAGGGGGAGACGATTGCACCTTTCTTGGTTCAGGCTATAACTGAATCAAAGATTTACATTCCGATTTTATCAAAG AGCTATGCTTCTAGCAAATGGTGCCTCCAGGAATTAGCTAAGATGGTTGAGTGTTGCAGGAAAGAGAAGGGACACTTAATATTGCCCGTTTTCTATTTCG TAGACCCAAGAGATGTGCGGCATCAGGCGGGTCCTTACGAAGAGGCATTTAAACAACATACTAAGAAACATGACCCTATGATCGTACAAGAATGGAGGAG AGCTCTCCAAGAAGTTGGGCAAATGAAAGGATGGCATGTTACCGAAACAGACGGACAGGGAGCTGTGATAGATGAAATTTTTTCTAAGGTGGAGTTATTT TTGAGGAGTAATTACACGTTAGTGACTGAGGAGTTGGTAGGAATTGATTGTCACGTGCAAGAAGTCACGAGGTTGTTGAATCTAGACTCTGGGGATGGGA AAGTTGTTGGGATTCATGGTATTGGCGGCATGGGTAAAACTACCATAGCTAAAGCAGTCTATGACATTATCTACACAAACTTCAATCGTTGCTGTTTCTT AGAAAATATACGAGAACTGCTGTTGAAGAATGATGGCATTATGGCTTTACAGAATAAATTCATCTCTAGAATTTTGAGGGGTGATGTTCAAGTTACAGAT GCTAGTGAAGGTATCAACATGATTAGAGAGAGAGTTTGCAAATACAAAGTTTTGGTTGTGCTTGATGATGTAGATGACAAGTTTGAATTTGACCAAATAC TGGGAAAATTAGGTCATTTCTCTTCAGAAAGTAGATTCATCATCACGACAAGAGACAAAAGAGTTCTAGAGCTTATTCAAGAATTTAAGTCATATGAACC CAATGAAATGAGCTATGATCATTCCCTCCAGCTTTTTAGTAGGCATGCATTTGCTTTGCGGTACCCTCCAGAAGGTTATGCAACTCTATGTGATGAATTC GTAAAAGTTGCAGCAAGGCTTCCTTTGGCTCTGAAGGTTATAGGGTCTCTCTTGTTTCGTAGAGATAAACAGTTTTGGGAAGAAAAGTTGATTGAACTAA AAGAAGTACCTGCTAGTAACAGTATGGTGCAACAGAGATTGAAGATTAGTTATAATGAGTTGACCGAGAATGAAAAGAAAATATATCTTGACATAGCTTG TTTCTTTATCGGAGAGGATAAAGAATTTCCGGTCCATATGTGGAGTGATTGTCATCTTTATCCAGAAAGTGGGATTAGGAATCTTGTCCTTAGGTCTTTG ATAAAAATTGATGAGAGAAATCAGTTCTGGATGCATGATCATCTCAGAGACCTTGGCAGAGCCATTGTTGTTGAGGAAGATGTTAAACAGCCATGCAAGC GCAGCAGAATATGGTCTAATGAGGATGCCGTGAACATGCTGGAAAATGTGGAGGCAACTGATCGAGTGGAAATGCTGAGGGTTCAGTTGCCATGGGCATC TCATAGTCACAACAAATATTTTGAGAAGCTGTCAAGCTTAAGGTACCTTAGCACGTTGAGTACTCCACTGTTTGGGGACTTCAGTGAAATACTTCCGAAT ACGCGGTGGCTTAAGCTGTCTTGGTGCATTCTGACCCCCACTGATCTGAACTTGAAGAATGTGGTGATTCTTGAATTACCGGGTTGTGAATTACCTGATG ATTGGAGAGGATGGAACAGGGTTAAGGTGGCACATAAGCTGAAAGTTATAAATCTACGTGCCTGCCGTGGCTTAAACATAATGCCCGACTTTTCTGAGTT AGTAGGTCTGGAGACGATTGATCTCACTGACTGTGTAGGGATGAAGGGGGAACTCAACATCAGTAACTTCAGGAATTTGATTGTTGTCAGGCTTCAGGAA ACTGAAATAACATTAACAGGTGACATGACAAAGCTTCAAAAGCTCCAAGAGATTAGAACTGGGAAATTGGGCTGGGGAGTTGAAGAAGTACCGGTGCTCC CCACAAACTTAAAACGCCTAACCATCTCATCCCATAGGGTTCCCAATCTTCTGGAGCTTAAAGATCTGGAGGAGCTGTGCTTTGAGAACTGTGATGACAC TCCTGAAATTCCTGGAGATATATGGCAGCTGCTAAAGTTGAAGACTTTGAAGATGCTCAAGTGCAGCTGCGAAGGTAGCCTACTATTGAATCACGATGGT GCCCTCCCATCATCTCTAACCTGCCTTATAATTGACTGGGGCAGGGGTTTGACTAGACTGCCAAATCTTGCAAATTTGAGTAATTTGGTGGAACTGCGAC TGTTTCACTTCCGGGCAAGTGAGATTCATGGTCTCGGGATGCTGAGAATGCTGGAAGCACTTGAAATATGTGAAGCCATGAGTTTAGATAATCTTCATGG CCTAGATAATCTCTTGCACCTGGAAGAGCTGACTCTGAAAAGTTGTGGACTAGAGGGTCTTCCCAGTGTATCGAATCTAATCAAGTTACACAAGCTAGTG ATTGTTAAGTGTCCGTTACTTTCTGAAATTCAAGGCCTAGGTGAACTGAAGCGGTGTTTGTTACATGTAGAAGTAAGTTGTTGTGACTGGCTAGCGGACA TGGACGGCCTTGAATCTCTAGAAGCACTGGAAAGTTTGACATTGGAGTCAACTACACCATCACCACATACCGGATATGACCTGCTGTCGATGTTAACCCT GGCAGAAGACAAGGATATTCCCCTCGTTGTCCCCCAGTACCTTAATCCTCATGAACCATTTCCAGACCTCTCTTGCCTGCAGAATCTAAAACAACTGTGC ATTGCTGGGTGGAAGCAGTTGCCCGAGATAATAGGACTCGGACGATTAAAATCATTACAATCCTTGGAAATCAAGGCATGCAAGTCACTTAGGAGGTTGC CTGATCTCGTAGGTCTTGACAACTTGGAGACGCTCGATGTTAGTGGTTGCATACGGTTGGCTGATGTGACAGGCCTCGACAGGTTGAAATCATTGCAGAA GCTTAATATGTCAAATTGTTGGTCGATTGAGGAGCTGCCTGATATATCTGGCATGAAGAGCCTAGACGTTTTAGATGTTAGTGAATGCATTAGGTTGATT AAAGTCATTGGTTTAGAGAAATTGAAGTCGTTGGGAGAGCTGCACATGGGTGGTTGCAAATCTATTAAGAAATTGCCAGATATGTCTCATCTCGAGAGTC TGAGGTCAATTAATCTCAAGGGATGCACACAATTGAAGACGGTTAAAGGACTCGAGAAACTACTTTTCTTATTGGATGTGAGTATGGACAAAAGATTAGA AGCGAAGCATTATTTGAAAACGTTTGTGTGGATTGGTGTGGATTTGACCCGATTAAAAATTCGTGATGCTCTGGGGAAAAAGAGGGAGTGGAAGGAGTGG ATGTGA
AA sequence Show only first row Show all	>Lus10037406 pacid=23152620 polypeptide=Lus10037406 locus=Lus10037406.g ID=Lus10037406.BGIv1.0 annot-version=v1.0 MEKRNMCSTKGITVSNAYSQSETSAPELQSVTSTLEYEVFLSFRGPDVRKSFADFLYNYLVRSKIRAFRDEEELQKGETIAPFLVQAITESKIYIPILSK SYASSKWCLQELAKMVECCRKEKGHLILPVFYFVDPRDVRHQAGPYEEAFKQHTKKHDPMIVQEWRRALQEVGQMKGWHVTETDGQGAVIDEIFSKVELF LRSNYTLVTEELVGIDCHVQEVTRLLNLDSGDGKVVGIHGIGGMGKTTIAKAVYDIIYTNFNRCCFLENIRELLLKNDGIMALQNKFISRILRGDVQVTD ASEGINMIRERVCKYKVLVVLDDVDDKFEFDQILGKLGHFSSESRFIITTRDKRVLELIQEFKSYEPNEMSYDHSLQLFSRHAFALRYPPEGYATLCDEF VKVAARLPLALKVIGSLLFRRDKQFWEEKLIELKEVPASNSMVQQRLKISYNELTENEKKIYLDIACFFIGEDKEFPVHMWSDCHLYPESGIRNLVLRSL IKIDERNQFWMHDHLRDLGRAIVVEEDVKQPCKRSRIWSNEDAVNMLENVEATDRVEMLRVQLPWASHSHNKYFEKLSSLRYLSTLSTPLFGDFSEILPN TRWLKLSWCILTPTDLNLKNVVILELPGCELPDDWRGWNRVKVAHKLKVINLRACRGLNIMPDFSELVGLETIDLTDCVGMKGELNISNFRNLIVVRLQE TEITLTGDMTKLQKLQEIRTGKLGWGVEEVPVLPTNLKRLTISSHRVPNLLELKDLEELCFENCDDTPEIPGDIWQLLKLKTLKMLKCSCEGSLLLNHDG ALPSSLTCLIIDWGRGLTRLPNLANLSNLVELRLFHFRASEIHGLGMLRMLEALEICEAMSLDNLHGLDNLLHLEELTLKSCGLEGLPSVSNLIKLHKLV IVKCPLLSEIQGLGELKRCLLHVEVSCCDWLADMDGLESLEALESLTLESTTPSPHTGYDLLSMLTLAEDKDIPLVVPQYLNPHEPFPDLSCLQNLKQLC IAGWKQLPEIIGLGRLKSLQSLEIKACKSLRRLPDLVGLDNLETLDVSGCIRLADVTGLDRLKSLQKLNMSNCWSIEELPDISGMKSLDVLDVSECIRLI KVIGLEKLKSLGELHMGGCKSIKKLPDMSHLESLRSINLKGCTQLKTVKGLEKLLFLLDVSMDKRLEAKHYLKTFVWIGVDLTRLKIRDALGKKREWKEW M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	4.2	0.8935
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	9.2	0.8894
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	14.0	0.8758
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	16.4	0.8836
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	24.0	0.8923
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	28.5	0.8653
AT5G01720			RNI-like superfamily protein (...		Lus10001264 [exp]	31.4	0.8137
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	31.9	0.8666
AT1G04985			unknown protein		Lus10015157 [exp]	37.0	0.8486
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	45.4	0.8474

Compare expression of checked genes

Lus10037406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.