Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53910 199 / 1e-60 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT3G14230 167 / 6e-48 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT3G16770 110 / 5e-28 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 99 / 2e-24 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 94 / 2e-22 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G43160 88 / 2e-20 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G50080 87 / 1e-19 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G33710 86 / 2e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 86 / 3e-19 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07310 86 / 8e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013186 [exp] 469 / 8e-166 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10003601 [exp] 103 / 5e-25 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 102 / 8e-25 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 96 / 2e-22 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 85 / 1e-18 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10014054 [exp] 84 / 2e-18 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10022426 [exp] 82 / 3e-17 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10033664 [exp] 80 / 3e-17 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10042907 [exp] 77 / 5e-16 AT2G44840 135 / 5e-39 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071700 [exp] 263 / 6e-85 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G163700 [exp] 261 / 2e-84 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.014G126100 [exp] 108 / 6e-27 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 108 / 1e-26 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 100 / 5e-24 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 92 / 4e-21 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.005G195000 [exp] 90 / 1e-19 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.001G067600 [exp] 86 / 3e-19 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 86 / 4e-19 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.009G101900 [exp] 84 / 2e-18 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10037448 pacid=23167171 polypeptide=Lus10037448 locus=Lus10037448.g ID=Lus10037448.BGIv1.0 annot-version=v1.0 ATGTGTGGCGGTGCTATCATCTCCGGGTTCATACCACCCACCTCCGTCGCTGCACGAACCTCCTCTAGGAGGCTCACCTCCGACTTCCTCTGGCCCGATC TCAAGTCAAAATCAGTCAGCAAGCCTTACTCCAAGCCTGCCGTGGTCGTAGATCTCGACGACGATTTCGAGGCTGACTTCCAGGAGTTCAAGGATGATTC CGATGTCGACGTTGACGATGTCGATGATGTCTTGGCCGATGTCAAGCCCTTTGCCTTCTCTGCCCCTCCTCCTCCTGCTCGTTCTGCAGCTGTCAACTCT GTTGAATTCAGCGGTCAAGCCGAGAAATCCGCAAAGAGGAAGAGGAAAAACCAGTACAGAGGGATTCGACAGCGCCCGTGGGGTAAGTGGGCTGCCGAGA TTCGTGATCCGAGGAAAGGAGTTCGTGTCTGGCTCGGGACATTCAACACCGCAGAAGAAGCTGCTAGAGCATATGATGCCGAGGCTCGTAGGATCCGTGG CAAGAAAGCCAAGGTGAACTTCCCTGATGATGCTGCTACTCCGCGTGCTATGCCAGCTAAGCGATCCGGAAAGGCTAAAGCTCAGAAACCATCATCAGCT GCTCCGAAGATTCCGAACTTGGACAACAGCGAATGCTTCGTGGAGGAGAAGCCATCAGCGAACCAGCTTGGCATGATGGTGGACCCCACATTGGCTTCGA ATGATGGAGTCAACAACATGTCAGCTGTCCCGAGCGATGCTGCTGTGTACTTCAGTTCGGACCAGGGAAGCAATTCGTTCGACTTTTCTGATTTCGGATG GACAGAACAGGTCCCCAAGACTCCCGAGATATCATCGGTCTTTCTGCCTGCTGGTCCCGAGTTTAGCGAATCAGGGTTCGTTGACGAGGATGCCAATCAT AGCAAGAAGCAAAAATGTAGCAACTCTGGTAATACTAATGATGTCTCTCCTGCTGCTGAGGAGGAGCTGTTCGGGTTCGATAAGTTGCTTCAGATGCCGT ATATGGACGGTGGATGGGAGGCTTCCCTTGATAACTTACTGAATGGAGACTCAACGCAGGATTGTGGGAACAGTTCATTGGAGGATCTTTGGAGCTTTGA TAACCTCTCCAACATGGTTGGAGAAGGAGGCTACTGA
AA sequence Show only first row Show all	>Lus10037448 pacid=23167171 polypeptide=Lus10037448 locus=Lus10037448.g ID=Lus10037448.BGIv1.0 annot-version=v1.0 MCGGAIISGFIPPTSVAARTSSRRLTSDFLWPDLKSKSVSKPYSKPAVVVDLDDDFEADFQEFKDDSDVDVDDVDDVLADVKPFAFSAPPPPARSAAVNS VEFSGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDDAATPRAMPAKRSGKAKAQKPSSA APKIPNLDNSECFVEEKPSANQLGMMVDPTLASNDGVNNMSAVPSDAAVYFSSDQGSNSFDFSDFGWTEQVPKTPEISSVFLPAGPEFSESGFVDEDANH SKKQKCSNSGNTNDVSPAAEEELFGFDKLLQMPYMDGGWEASLDNLLNGDSTQDCGNSSLEDLWSFDNLSNMVGEGGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	0	1
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	1.0	0.9558
AT1G75810			unknown protein		Lus10033134 [exp]	1.4	0.8866
					Lus10036759 [exp]	2.4	0.8719
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	3.2	0.8769
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	4.2	0.8855
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	4.2	0.8466
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	5.9	0.8675
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	7.7	0.8841
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	8.1	0.8382
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	8.8	0.8434

Compare expression of checked genes

Lus10037448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.