Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16770 115 / 3e-31 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT1G72360 96 / 8e-24 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G47520 88 / 9e-22 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G43160 79 / 8e-18 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G50080 78 / 2e-17 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G33710 77 / 5e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G53910 79 / 6e-17 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT1G03800 74 / 6e-16 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT5G51190 74 / 8e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G14230 74 / 2e-15 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016827 [exp] 303 / 2e-104 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10008214 [exp] 100 / 4e-25 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10003601 [exp] 98 / 2e-24 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 89 / 1e-20 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10013186 [exp] 81 / 1e-17 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10016210 [exp] 74 / 6e-16 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10005805 [exp] 76 / 9e-16 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 75 / 1e-15 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10033664 [exp] 73 / 1e-15 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210900 [exp] 132 / 6e-38 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 132 / 9e-38 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G126100 [exp] 107 / 2e-27 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 95 / 5e-23 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.003G071700 [exp] 93 / 5e-22 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G163700 [exp] 86 / 2e-19 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.005G087200 [exp] 84 / 4e-19 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.007G076800 [exp] 82 / 3e-18 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 76 / 2e-16 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 75 / 3e-16 AT5G13330 142 / 5e-42 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10037487 pacid=23167358 polypeptide=Lus10037487 locus=Lus10037487.g ID=Lus10037487.BGIv1.0 annot-version=v1.0 ATGTGCGGCGGTGCGATCATTTCCGGCTTCGTCGACCAGAAGAGCGGCCGGCGTCTGAAGGCCAAAGAGCTATGGTCCGAGATCGACACTTTTTCCGACT TCATCGGCTTCGACTTCCCCGTCGCCGATACTAAACCAAACACTATTCCTAGAGTACTCAGCTCTAAAGACGTTGCTGGTCCGGAGAAGAGCAGTGACGC GGCCGTGAGAGGAATAAGGCATCGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCGTTCAAGGGGACTAGAGTCTGGCTTGGAACCTACAACACG GCGGAGGAAGCCGCTCGCGCTTACGATGAAGCCGCCAAGCGGATCCGAGGCGACAAGGCCAAGCTCAATTTCCCCTCCGCCGCCGTGGACAGGAAATCTC CTCCTCGCGCTGAATCCGGAGCTTCTTCCTTTTCTCCGCCTTCGGCCAAGAAGCAGCGCTGTTTCTCCGTCGATTCTGCACCGGTGGAAACCGCTCTTCC TCCTCCTCCTCCTCCTCCGTCGCTAGCGTGTGGGGGATTTGGATTTGAGGAAACCGAGGTGTCCGGCGGCGCGTACGAGCTAAAGAAGCAAATCTCGAGT CTGGAATCATTCCTCGAGCTGGAACCGGAGAAAAATGCGGCGGCACTTCCGGTGGTCAACGGCGGGGGTCAACGGCGGCGGTGA
AA sequence Show only first row Show all	>Lus10037487 pacid=23167358 polypeptide=Lus10037487 locus=Lus10037487.g ID=Lus10037487.BGIv1.0 annot-version=v1.0 MCGGAIISGFVDQKSGRRLKAKELWSEIDTFSDFIGFDFPVADTKPNTIPRVLSSKDVAGPEKSSDAAVRGIRHRPWGKWAAEIRDPFKGTRVWLGTYNT AEEAARAYDEAAKRIRGDKAKLNFPSAAVDRKSPPRAESGASSFSPPSAKKQRCFSVDSAPVETALPPPPPPPSLACGGFGFEETEVSGGAYELKKQISS LESFLELEPEKNAAALPVVNGGGQRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10037487 [exp]	0	1
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	6.8	0.7837
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	15.3	0.7223
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	18.1	0.7188
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	19.0	0.6976
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	21.9	0.7013
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	22.2	0.7390
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	22.6	0.6835
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	23.7	0.6986
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	28.4	0.6812
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	31.9	0.7154

Compare expression of checked genes

Lus10037487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.