Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16350 230 / 4e-72 MYB Homeodomain-like superfamily protein (.1) AT5G47390 213 / 7e-66 MYB myb-like transcription factor family protein (.1) AT1G70000 159 / 2e-46 MYB myb-like transcription factor family protein (.1.2) AT5G56840 149 / 5e-43 MYB myb-like transcription factor family protein (.1) AT5G61620 147 / 4e-41 MYB myb-like transcription factor family protein (.1) AT1G74840 124 / 2e-33 MYB Homeodomain-like superfamily protein (.1.2) AT2G38090 124 / 1e-32 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G49010 122 / 7e-32 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G19000 120 / 1e-31 MYB Homeodomain-like superfamily protein (.1.2) AT5G58900 120 / 3e-31 MYB Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006826 [exp] 484 / 2e-172 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 355 / 4e-121 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 343 / 2e-116 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10004384 [exp] 252 / 3e-81 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10040181 [exp] 251 / 9e-81 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10013289 [exp] 168 / 3e-49 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 157 / 4e-45 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 142 / 4e-40 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 139 / 2e-38 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G049100 [exp] 363 / 3e-124 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G189800 [exp] 351 / 1e-119 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G079500 [exp] 253 / 1e-81 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 241 / 6e-77 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.010G039233 [exp] 168 / 3e-49 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 167 / 9e-49 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 161 / 3e-47 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 142 / 2e-39 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 140 / 2e-38 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.012G073900 [exp] 131 / 4e-35 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037560 pacid=23167195 polypeptide=Lus10037560 locus=Lus10037560.g ID=Lus10037560.BGIv1.0 annot-version=v1.0 ATGATGACTCGGAGGTGCTCGCATTGCAGCAACAACGGCCACAACTCCAGGACCTGTCCAACGCGCTCCGCCGCTCCCACCGGCGGCGGAGGAGGAGCAG GGGGGCCGTCGTCTCTTTCGGGCGTGAAGCTGTTCGGAGTTAGGCTAACCGATGGCTCGATTATTAAGAAGAGCGCAAGTATGGGGAATCTGTCCGCTCA CTACCATTCATCGTCTCCCGCCGCTTCCCCTAATCCGGACTCTCCCGTCTCCGATCACGCCCGTGATTCGGGTCGATTGGCTGACGGCTATTTGTCTGAT GACCCGGCTCATGCATCCAGCTCATCTAATCGGCGCGGAGATAGGAAGAAAGGCGTCCCCTGGACAGAAGAAGAGCATCGCTTATTCTTAATTGGTCTTC AGAAACTAGGGAAAGGAGATTGGCGCGGAATAGCTCGCAACTATGTTGTGTCAAGGACTCCTACCCAGGTTGCTAGTCATGCTCAGAAGTATTTCATTCG GCAGAACAATGCTACTCGAAGGAAGCGAAGATCCAGCCTTTTCGACATGGTTACCGACTCGGCGTCTGATCCTCCGCACTCAGTCCCAGAAGAGAAAGAG TTGCTTTCCTTACAAGCAAAGGAAAGTAACAAAGCAGATAATCATCCTTCACTAAACCTTTCTCTTAAGCCTGACTATGAACCAATGGAAACAACATCTG AAGAACCCGCTAAGGAAGAGGAAGAAGCCGACGAAACTACAATGCAATCGAATGAATCGTTACCACACGTTCCAAGACCAACACAGTTTACCCTGCTCGC TCCATCGCAAAACAGCGAATTCACGCCATTCGTTCACCAGTTTGTTCCGGCCTATGTTCCGGTTCCTTATCCATTCTGGCCTGCCAACCCAGTTCCGGTC AAGCAAACCGTGGTTACAGAAACTTCCAATCACCAGGTGCTAAGGCCAGTTGCAGTAATTCCAAAACAGCCGGTCAATGTGGATGAACTCGTCGGCATCT CTAACTTAAGCATCGGAGATCCTTCGCCGCTGTCCCTGAAGCTGACATTGGAGACGTCAAGGCACTCTGCGTTTCACGCTAATGCTGCTCCGGTGTCTCG ACCGGAGATCGGCAAGGGAAAGATTCAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10037560 pacid=23167195 polypeptide=Lus10037560 locus=Lus10037560.g ID=Lus10037560.BGIv1.0 annot-version=v1.0 MMTRRCSHCSNNGHNSRTCPTRSAAPTGGGGGAGGPSSLSGVKLFGVRLTDGSIIKKSASMGNLSAHYHSSSPAASPNPDSPVSDHARDSGRLADGYLSD DPAHASSSSNRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQNNATRRKRRSSLFDMVTDSASDPPHSVPEEKE LLSLQAKESNKADNHPSLNLSLKPDYEPMETTSEEPAKEEEEADETTMQSNESLPHVPRPTQFTLLAPSQNSEFTPFVHQFVPAYVPVPYPFWPANPVPV KQTVVTETSNHQVLRPVAVIPKQPVNVDELVGISNLSIGDPSPLSLKLTLETSRHSAFHANAAPVSRPEIGKGKIQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	0	1
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	3.0	0.9331
AT3G53630			unknown protein		Lus10025312 [exp]	3.7	0.9252
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	9.5	0.8821
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	13.2	0.9225
AT4G10265			Wound-responsive family protei...		Lus10018529 [exp]	14.7	0.9059
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008753 [exp]	16.5	0.9178
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	16.9	0.8837
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	17.5	0.9152
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	18.9	0.8293
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	21.5	0.8604

Compare expression of checked genes

Lus10037560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.