Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79800 116 / 8e-33 AtENODL7 early nodulin-like protein 7 (.1) AT5G14345 87 / 6e-22 AtENODL21 early nodulin-like protein 21 (.1) AT3G20570 79 / 3e-18 AtENODL9 early nodulin-like protein 9 (.1) AT3G18590 79 / 3e-18 AtENODL5 early nodulin-like protein 5 (.1) AT5G57920 79 / 4e-18 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 77 / 2e-17 AtENODL15 early nodulin-like protein 15 (.1) AT4G32490 77 / 2e-17 AtENODL4 early nodulin-like protein 4 (.1) AT3G60280 77 / 2e-17 UCC3 uclacyanin 3 (.1) AT2G25060 76 / 2e-17 AtENODL14 early nodulin-like protein 14 (.1) AT1G48940 76 / 3e-17 AtENODL6 early nodulin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011433 [exp] 214 / 5e-71 AT1G79800 124 / 4e-36 early nodulin-like protein 7 (.1) Lus10024846 [exp] 148 / 6e-45 AT1G79800 147 / 1e-44 early nodulin-like protein 7 (.1) Lus10018758 [exp] 145 / 4e-44 AT1G79800 142 / 2e-43 early nodulin-like protein 7 (.1) Lus10009617 [exp] 79 / 2e-18 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10039852 [exp] 79 / 4e-18 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10022318 [exp] 79 / 5e-18 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10014880 [exp] 78 / 7e-18 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10018617 [exp] 77 / 2e-17 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10032111 [exp] 74 / 2e-16 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187700 [exp] 123 / 2e-35 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 117 / 6e-33 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.018G018200 [exp] 82 / 9e-20 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 82 / 1e-19 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.011G135400 [exp] 82 / 3e-19 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.017G011200 [exp] 81 / 1e-18 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.006G184100 [exp] 79 / 3e-18 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.011G117800 [exp] 81 / 6e-18 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.002G161300 [exp] 77 / 7e-18 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 76 / 3e-17 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10037575 pacid=23167356 polypeptide=Lus10037575 locus=Lus10037575.g ID=Lus10037575.BGIv1.0 annot-version=v1.0 ATGAACTACTCTCATCAAGCAGCAACCTCGACCTCTATGGCTATGGCTATGGCTCTCTTTTTCTTCTTCAACTCGGCCGCTTACAGCGAAGTGACAGTGT TCAAGGTCGGCGATGGCTTCGGATGGCAGCAGCCAACGACAAACACCACTACTCAGCTTTACTACACTCACTGGGCTACCAATCACAAATTCCAAGTCGG AGATTCGCTCCTGTTCGAGTACAAGAACGATTCGGTAGCAGAAGTCGACAAATGGGGATACAGCCAGTGCAACGCTAGCACGTCTAAGGAAGTTTTTGAC GACGGGAACAGCAGCTTTGTGCTGGAGAAGCCTGGACCTTTCTACTTCATCAGTGGGAACTTCGGCCATTGCCAGAACGGAATGCTGCTTCTTGTCGAAG TCATGCACCAGTGCCATCACGATAGCATGGCTCCAGATGCGGAGTATGGCAATCCACCTGAAGGGTCGTCGTCGGAGTCTTCTCCTTCCTCGTCCATGGA GCCACGTCAGCCGAGTTCGGCAGTGATCGTGTCGGTTATAGTCAGTTCAGTCACTGTTGTCCTTATCGCTACATTCATTGCTCTGGCATGGTGTTCGCCC TGA
AA sequence Show only first row Show all	>Lus10037575 pacid=23167356 polypeptide=Lus10037575 locus=Lus10037575.g ID=Lus10037575.BGIv1.0 annot-version=v1.0 MNYSHQAATSTSMAMAMALFFFFNSAAYSEVTVFKVGDGFGWQQPTTNTTTQLYYTHWATNHKFQVGDSLLFEYKNDSVAEVDKWGYSQCNASTSKEVFD DGNSSFVLEKPGPFYFISGNFGHCQNGMLLLVEVMHQCHHDSMAPDAEYGNPPEGSSSESSPSSSMEPRQPSSAVIVSVIVSSVTVVLIATFIALAWCSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10037575 [exp]	0	1
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	8.9	0.9393
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	20.6	0.9309
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	23.2	0.9223
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	25.5	0.9283
					Lus10014739 [exp]	25.5	0.9088
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	27.9	0.9160
AT5G46030			unknown protein		Lus10014995 [exp]	30.4	0.8760
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	32.9	0.9179
					Lus10024872 [exp]	38.0	0.9187
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	38.5	0.9168

Compare expression of checked genes

Lus10037575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.