Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58290 419 / 1e-148 RPT3 regulatory particle triple-A ATPase 3 (.1) AT4G29040 246 / 2e-80 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 244 / 1e-79 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G19990 213 / 7e-68 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 213 / 1e-67 RPT6A AAA-type ATPase family protein (.1) AT1G53750 211 / 1e-66 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 202 / 2e-63 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 200 / 1e-62 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT1G45000 199 / 2e-62 AAA-type ATPase family protein (.1.2) AT5G43010 197 / 6e-62 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006854 [exp] 421 / 2e-150 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1) Lus10015524 [exp] 245 / 4e-81 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 240 / 7e-78 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 242 / 3e-77 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10019995 [exp] 245 / 5e-76 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 212 / 2e-67 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 212 / 8e-67 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 211 / 1e-65 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10001313 [exp] 202 / 8e-64 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028000 [exp] 419 / 1e-148 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 417 / 4e-148 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.014G194700 [exp] 248 / 4e-81 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 246 / 2e-80 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G216600 [exp] 211 / 7e-67 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 211 / 9e-67 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 211 / 1e-66 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.001G161700 [exp] 209 / 3e-66 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 208 / 1e-65 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G025100 [exp] 201 / 3e-63 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10037597 pacid=23167150 polypeptide=Lus10037597 locus=Lus10037597.g ID=Lus10037597.BGIv1.0 annot-version=v1.0 ATGCTTGCTAAGGCAGTTGCCAATCACACTACAGCAGCTTTCATAAGAGTTGTTGGGTCTGAGTTTGTGCAGAAGTATTTGGGAGAGGGCCCTCGCATGG TCCGTGATGTTTTCCGTCTTGCCAAAGAGAATGCTCCTGCAATTATTTTTATAGATGAAGTGGATGCTATTGCTACGGCTAGGTTTGATGCACAGACAGG AGCTGATAGAGAAGTTCAACGTATCCTGATGGAGCTTCTGAATCAGATGGACGGGTTTGATCAGACTGTGAATGTAAAGGTTATAATGGCAACTAATCGT GCCGATACACTGGACCCTGCACTCCTTCGTCCTGGAAGGCTGGACCGAAAAATCGAATTCCCTCTGCCTGATAGACGTCAGAAAAGGCTAGTTTTCCAGG TTTGCACTGCTAAAATGAATCTCAGTGACGAGGTTGATTTGGAGGATTATGTGTCGAGGCCAGATAAAATTAGCGCTGCCGAGATCTCGGCCATCTGCCA GGAAGCAGGGATGCACGCTGTAAGGAAGAACAGGTACGTGATACTGCCCAAGGACTTCGAGAAGGGTTACCGTTCCAACGTGAAGAAGCCCGATACCGAT TTCGAGTTCTACAAGTAA
AA sequence Show only first row Show all	>Lus10037597 pacid=23167150 polypeptide=Lus10037597 locus=Lus10037597.g ID=Lus10037597.BGIv1.0 annot-version=v1.0 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFEKGYRSNVKKPDTD FEFYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10037597 [exp]	0	1
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	1.0	0.9219
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	1.4	0.8986
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	4.9	0.8855
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	12.1	0.8971
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	15.2	0.8697
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	16.6	0.8840
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	16.7	0.8586
AT3G15610			Transducin/WD40 repeat-like su...		Lus10019450 [exp]	17.3	0.8504
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	19.1	0.8795
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	19.3	0.8502

Compare expression of checked genes

Lus10037597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.