Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13890 174 / 6e-51 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G63910 152 / 2e-42 MYB AtMYB103 myb domain protein 103 (.1) AT5G26660 150 / 5e-42 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 150 / 5e-42 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G12720 149 / 6e-42 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT4G01680 145 / 5e-41 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G57560 146 / 7e-41 MYB ATMYB50 myb domain protein 50 (.1) AT5G12870 135 / 7e-37 MYB ATMYB46 myb domain protein 46 (.1) AT3G08500 131 / 5e-35 MYB ATMYB83 myb domain protein 83 (.1) AT5G65230 129 / 2e-34 MYB ATMYB53 myb domain protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015608 [exp] 300 / 1e-99 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 147 / 5e-40 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10024669 [exp] 148 / 8e-40 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 148 / 8e-40 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10038395 [exp] 143 / 9e-40 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 142 / 3e-39 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10031281 [exp] 136 / 1e-36 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10002559 [exp] 133 / 2e-35 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10027369 [exp] 133 / 2e-35 AT5G12870 218 / 5e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197000 [exp] 177 / 4e-52 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.003G155700 [exp] 155 / 4e-44 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.001G099800 [exp] 151 / 7e-43 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.008G081600 [exp] 152 / 8e-43 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.003G132000 [exp] 151 / 1e-42 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.012G084100 [exp] 150 / 6e-42 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.013G001000 [exp] 152 / 8e-42 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 150 / 1e-41 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.014G111200 [exp] 149 / 8e-41 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.001G075400 [exp] 145 / 3e-40 AT3G12720 246 / 6e-80 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037625 pacid=23167178 polypeptide=Lus10037625 locus=Lus10037625.g ID=Lus10037625.BGIv1.0 annot-version=v1.0 ATGGGGCATCACTCATGTTGCAACAAGCAGAAGGTGAAGAGATGGAGCTCCGTCCCTAAACTCGCTGGGCTGCAGAGATGCGGTAAGAGTTGTAGGTTGA GATGGATAAACTACTTGAGGCCGGATCTCAAGAGAGGGAGCTTCTCTCCACAAGAAGCTGCCCTTATTATTGAACTCCACACCATTCTTGGCAATAGATG GGCTCAGATTGCCAAGCATTTGCCAGGGAGAACAGACAATGAAGTGAAGAACTTTTGGAACTCAAGCATTAAGAAGAAGCTCATCTCTCACCATCTTCAT CATCAGTTTCATCATGGAGTTATGATCAATGTCCCACCATCGGGACCATCTGGATTCGACCCCAATTCCGCTTCTTCGGCCTCTTCTTCGCTACTTTCTG GAGGAGAAGAAGCCTTCTTCTCCGCGAATCATCATCACCTGTTGGTATCCCCATCCCCGAGCACCAACAACATAATTAACGATGTATCCTCTTCTTCAGT TCTGCAAAGCTATGGTAACATCACCATTAGTGATCATCATCATTTCAATGTCTTTGATCAACAATATTTCCCAAACCCATTTCTCATCAACTCTTCTTCT TCTGCTTCTTCTTCATCTTCTTCCCTTCTCAACATCATTAATGACCCAATTTGGCCACCACCACCACCATCTTTCCCTTTCTTGCCACAACACCATCATG ACCACCAACACCTACTCATGATGAACAACATTGATCAAGATCACCACCACCACCAAATCTTGATCACCAACGTTAACAACGACGATGATGGCGACGATGG TGCTAAACAAGATGATCACGACCATCAAATCTTGATCACCAACGTTAACAACGACGATGATGGCGACGATGGTGCTAAACAAGATGATCACGACCATCAA ATCTTGATCCCTTATAATGACAATGATGATGATGATGATCTACTCATGATGCCATCATCACCTAAGCTTTCTGACCAAGCACCACCAAAGCCAGAGGACC AAGACCACCCTCTTTCCATGACATCACCACCACCACCAACAAGCTCGAGCCAGATCGATGATGATCCGTACATGGAAGCTATGATCATGTCATCCTTACC ATCACCATCACCAGCATTCCTTGGTTGGAACATGACTGGATAG
AA sequence Show only first row Show all	>Lus10037625 pacid=23167178 polypeptide=Lus10037625 locus=Lus10037625.g ID=Lus10037625.BGIv1.0 annot-version=v1.0 MGHHSCCNKQKVKRWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLISHHLH HQFHHGVMINVPPSGPSGFDPNSASSASSSLLSGGEEAFFSANHHHLLVSPSPSTNNIINDVSSSSVLQSYGNITISDHHHFNVFDQQYFPNPFLINSSS SASSSSSSLLNIINDPIWPPPPPSFPFLPQHHHDHQHLLMMNNIDQDHHHHQILITNVNNDDDGDDGAKQDDHDHQILITNVNNDDDGDDGAKQDDHDHQ ILIPYNDNDDDDDLLMMPSSPKLSDQAPPKPEDQDHPLSMTSPPPPTSSSQIDDDPYMEAMIMSSLPSPSPAFLGWNMTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10037625 [exp]	0	1

Compare expression of checked genes

Lus10037625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.