Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72570 339 / 1e-114 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 330 / 6e-109 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 329 / 7e-109 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 328 / 2e-108 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 326 / 2e-107 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 319 / 1e-104 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G10510 291 / 8e-94 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 288 / 2e-93 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 222 / 1e-68 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G79700 202 / 2e-62 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018655 [exp] 349 / 4e-116 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 347 / 1e-115 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 334 / 6e-112 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 332 / 2e-109 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10015653 [exp] 284 / 1e-95 AT1G72570 210 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 293 / 3e-95 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 266 / 5e-85 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10028880 [exp] 244 / 9e-77 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008939 [exp] 244 / 2e-76 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G169500 [exp] 369 / 1e-124 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 342 / 2e-112 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 342 / 3e-112 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 338 / 3e-111 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 336 / 4e-110 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 330 / 1e-109 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G167700 [exp] 326 / 8e-108 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.018G091600 [exp] 327 / 9e-108 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.001G018400 [exp] 325 / 3e-107 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 327 / 2e-106 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10037670 pacid=23167269 polypeptide=Lus10037670 locus=Lus10037670.g ID=Lus10037670.BGIv1.0 annot-version=v1.0 ATGGTCGTACCCACCAGAGATATCATCTTCCCCGACAATTACACCCCCGCCGCCGCCACGTACCATTTCGACGGCGGGGGCAGTGGTTCGGCATGGCTGA GACAGGAGCAGCAAGAAGTTTGTGGTGGGGATAGCAGGAATCAGCATAAGCTGTCGTTGTCGTCGATGGTGAGTCCGGTGATGAGCGATGGGTTAGCTGT GGTGGCTGCCGCCGGCGGTGATAATGGAGATGGTAAGGGTAAAAGGGTAAATGGGAAGGCTGTTGATACGTTTGGGCAAAGGACTTCTCAGTTTCGAGGT GTTACCAGGCATAGGTGGACAGGAAGATATGAGGCTCATTTGTGGGACAATAGTTGTAGGAAGGAAGGCCAAACTAGGAAAGGGAGACAAGGTGGTTATG ACAAGGAAGAGAAGGCAGCAAGAGCTTATGATTTGGCTGCCCTTAAGTATTGGGGTCCTTCTACTCACATCAATTTCCCAATGAGCACTTATGAGAAGGA GCTAGAGGAGATGAAGCACATGACCAGACAAGAATTTGTTGCTAACTTAAGAAGAAAAAGCAGTGGGTTCTCAAGGGGAGCATCAATGTACCGAGGTGTG ACAAGGCATCATCAACATGGGCGATGGCAAGCTAGAATCGGGAGAGTTGCTGGGAACAAAGACTTGTACCTCGGCACATTCAGTACCCAAGAGGAAGCAG CCGAGGCATACGACATTGCGGCGATCAAATTCAGAGGGACGAGCGCCGTCACTAATTTCGATATTAGCCGGTACGACGTCAAGAGAATCTGCTCTAGCTC CACCTTGATCGCCAGCGATCTCGCCAAACGCGCTTCTCCTCCAGCTCCGGCCGCGACTTCCTCCGGTTCGCCGGTAGTACCCTTGCTTGCTATATCTAGC GGGGAATGCTCGGATGATCGGTTGCATACCGATCATCCTCATCATCATCATCATGTGGTATGGAATAAAGACGGTGGGAGTGACGTGGATTCGGGTCCCG GTGGGGCTGCCACGAGATGCTTGGACTTGGTTGGTCATCCAGTTCCAATGTTTGCTTTGTGGAATCAACGATGA
AA sequence Show only first row Show all	>Lus10037670 pacid=23167269 polypeptide=Lus10037670 locus=Lus10037670.g ID=Lus10037670.BGIv1.0 annot-version=v1.0 MVVPTRDIIFPDNYTPAAATYHFDGGGSGSAWLRQEQQEVCGGDSRNQHKLSLSSMVSPVMSDGLAVVAAAGGDNGDGKGKRVNGKAVDTFGQRTSQFRG VTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPSTHINFPMSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASMYRGV TRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRASPPAPAATSSGSPVVPLLAISS GECSDDRLHTDHPHHHHHVVWNKDGGSDVDSGPGGAATRCLDLVGHPVPMFALWNQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	0	1
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	2.4	0.8676
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	2.4	0.8400
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	2.8	0.8803
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	4.5	0.8243
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	6.5	0.8564
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	6.9	0.7688
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	8.1	0.7536
AT1G49870			unknown protein		Lus10013902 [exp]	8.2	0.8071
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	10.6	0.8446
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	12.4	0.8397

Compare expression of checked genes

Lus10037670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.