Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16857 585 / 0 GARP ARR1 response regulator 1 (.1.2) AT4G16110 577 / 0 GARP ARR2 response regulator 2 (.1) AT2G01760 301 / 1e-95 GARP ARR14 response regulator 14 (.1) AT2G25180 300 / 7e-93 GARP ARR12 response regulator 12 (.1) AT1G67710 276 / 2e-84 GARP ARR11 response regulator 11 (.1) AT4G31920 271 / 3e-82 GARP ARR10 response regulator 10 (.1) AT5G58080 253 / 9e-75 GARP ARR18 response regulator 18 (.1) AT5G49240 182 / 4e-52 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 149 / 1e-39 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT5G07210 140 / 7e-35 GARP ARR21 response regulator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016846 [exp] 1264 / 0 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 318 / 9e-99 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 315 / 7e-98 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10011389 [exp] 301 / 2e-95 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 299 / 4e-94 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10019058 [exp] 252 / 5e-75 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 246 / 9e-73 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 201 / 3e-57 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10039345 [exp] 148 / 2e-41 AT3G16857 125 / 6e-34 response regulator 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G213500 [exp] 861 / 0 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 853 / 0 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 376 / 6e-121 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 368 / 8e-118 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G111300 [exp] 331 / 3e-103 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 322 / 4e-100 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 309 / 4e-95 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 300 / 1e-91 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.010G053100 [exp] 295 / 2e-91 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 284 / 1e-86 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037719 pacid=23167153 polypeptide=Lus10037719 locus=Lus10037719.g ID=Lus10037719.BGIv1.0 annot-version=v1.0 ATGAATCCCCTCAATGGAAAGGGATCCCTCTCCGCTTCTGTTTCCAGAGTCAACTGGAAATCTGGCGAACCTGTCACGGATCAGTTCCCCGCCGGGCTCC GTGTTATGGTCGTTGACGACGATCCCACTTGCCTCATGATTTTGGAGAAGATGCTCAGAACCTGTCTTTATCAAGTGAAGAAATGCAGTAGAGCAGAGGA GGCCTTATCAATCTTGAGAGAGAACAGAAATGGGTACGATATAGTGATAAGTGATGTACATATGCCAGACATGGATGGGTTCAAGCTGCTAGAGCTTGTT GGTCTGGAAATGGATCTGCCTGTTATCATGATGTCTGCGGATGATTCAAAGAGTGTGGTAATGAAGGGAGTCACTCATGGTGCTTGTGACTATCTGATAA AGCCGGTTCGGATCGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGTAAGAAGAGGAGTGAGTGGAAGGAAGTGGAGCAATCTGGGAGTGCTGAGGA AGGGGATTCTAGGCAGCCTAAACAGTCCGAGGATGCCGATTATTCTTCCTCCGTTAATGAAAGTAACTGGAGAAATTCCAAGAGACGGAAGGATGACGAT GAGGAAGGAGAGGATAGGGATGACACCTCCTCGTTGAAGAAGCCTCGAGTGGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTCGCTGCTGTTAACCAGC TTGGCGTAGACAAGGCCGTCCCGAAGAAGATTCTTGAGTTGATGAACGTACCTGGACTCACTAGAGAAAACGTTGCTAGCCACCTTCAGAAATATCGATT GTATCTGAGAAGGTTAAGTGGTGTTTCTCAGCATCAAAACAATTTGGGGAACTCGTTTATGTCCCAAGACCCAGGTTATGGACCATTGTCCACACTTAAT GGACTAGACCTTCAAACGCTTGCTGCCACTGGCCAGCTCCCAGCTCAAAGTCTTGCAACCCTTCAAGCTGCAGGATTAGGTCGAGCGGGTTCAAAGTCCA GGATCCCAATCCCGGTAGTTGATCAGAGGAACCTGTTCAGCTTTGAGAACCCGAAATTGGCTTATGGAGATAGCCAACAGCAACAGCAACATCATTTGAG TGGTGGTAAGCAGATGAACTTGCTTCATGGAATTCCAACAAATATGGAGCCAAAGCAGCTTGTGAATTTGCACCATTCGGGATCGTCTCATGGAAGCATG AACGTGCAAGTTAATTCTCAGAGTGGGTCTCTGCTGATGCAAATGTCTCAACCACAGTCTAGAGCACAGATGCTAAATGATCCCTCTGTAGCCAACCAAG TTCCCAGGATTCCTTCGACTGTAGGTCAGCCGATTATGTCAAATACCCTTGCTGGCGGTATCATGTCGAGAAATGGTATGGACGAAAGCAACAGACCGAT GGGATATAATAATCCAGCTTCACAGTCTTCATCAATCATGAACTTCCCCTTGCACAGCTCAGCGGAACTGCGAAGTAATAATAGCTACCCTCTTCAGAAT AATCCAGTAGTAGCCAACCTCACGTCAAAAGGTGCTTTTCAAGAAGACGTGGCCTCAGAAATGAAAGGAGCGCCAGGATTCATGCCTAGCTATGACATTT TTGGTGACTTGAACCAGCAGAAGGCCCATAATTGGGAGCTGCAGAATGTTGGCTTGACCTTTAATGCCTCGCAACAAGGCAATATTGAGGTGGGCTCTTC GGGTGTATCTCTTCAAGGTTTTTCCTCTAGTCAAGGAAGTGGCCAAACCAGGAATTCAGCAGCTATCGTAAGCAGGCCGCCTATGTTCTCTGCTGCTGGC GTGGAACATGTGAACAACACAATAAGTGTCGGCCAGCATATGAATAACCTCTATTCCGAGAATAATCCGGTTAGTGTTAAAGTTGAAAGGATTGATACAG GCAATCAGACTACACTCTTTCACGAGCAGTTTGGTCAAGATGATCTCATGACTGCATTACTCAAGCAACAGCAGGGAGGCATTGGACCAGCAGAGAATGA GTTTGACTTAGACGGGTATACCTTCGACAATATTCATGTAGCTGCATTTCATCTGTCAATATCGAGAGTTCTGCCGGGTATAAAGGTGTGGGGCATAAAA GAACCAGAATGGGGAAGTTGA
AA sequence Show only first row Show all	>Lus10037719 pacid=23167153 polypeptide=Lus10037719 locus=Lus10037719.g ID=Lus10037719.BGIv1.0 annot-version=v1.0 MNPLNGKGSLSASVSRVNWKSGEPVTDQFPAGLRVMVVDDDPTCLMILEKMLRTCLYQVKKCSRAEEALSILRENRNGYDIVISDVHMPDMDGFKLLELV GLEMDLPVIMMSADDSKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKRSEWKEVEQSGSAEEGDSRQPKQSEDADYSSSVNESNWRNSKRRKDDD EEGEDRDDTSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLGNSFMSQDPGYGPLSTLN GLDLQTLAATGQLPAQSLATLQAAGLGRAGSKSRIPIPVVDQRNLFSFENPKLAYGDSQQQQQHHLSGGKQMNLLHGIPTNMEPKQLVNLHHSGSSHGSM NVQVNSQSGSLLMQMSQPQSRAQMLNDPSVANQVPRIPSTVGQPIMSNTLAGGIMSRNGMDESNRPMGYNNPASQSSSIMNFPLHSSAELRSNNSYPLQN NPVVANLTSKGAFQEDVASEMKGAPGFMPSYDIFGDLNQQKAHNWELQNVGLTFNASQQGNIEVGSSGVSLQGFSSSQGSGQTRNSAAIVSRPPMFSAAG VEHVNNTISVGQHMNNLYSENNPVSVKVERIDTGNQTTLFHEQFGQDDLMTALLKQQQGGIGPAENEFDLDGYTFDNIHVAAFHLSISRVLPGIKVWGIK EPEWGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	0	1
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	1.0	0.9155
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	5.7	0.8173
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	7.2	0.6930
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	9.8	0.7768
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	9.9	0.7237
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	10.2	0.7339
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	18.9	0.7512
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	19.0	0.7326
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	19.0	0.6891
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	27.1	0.7379

Compare expression of checked genes

Lus10037719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.