Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29060 46 / 2e-05 GRAS GRAS family transcription factor (.1) AT3G54220 45 / 4e-05 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G29065 44 / 0.0001 GRAS family transcription factor (.1) AT1G07520 43 / 0.0001 GRAS GRAS family transcription factor (.1) AT1G07530 43 / 0.0002 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G37650 42 / 0.0003 GRAS SCL9 GRAS family transcription factor (.1) AT5G59450 40 / 0.0009 GRAS SCL11 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016887 [exp] 381 / 9e-135 ND 40 / 0.001 Lus10041128 [exp] 80 / 8e-17 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10024252 [exp] 79 / 2e-16 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10036457 [exp] 76 / 3e-16 AT3G03450 60 / 4e-10 RGA-like 2 (.1) Lus10023621 [exp] 77 / 8e-16 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10037753 [exp] 76 / 1e-15 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10016889 [exp] 76 / 3e-15 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10016897 [exp] 72 / 3e-14 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10037758 [exp] 72 / 3e-14 AT3G03450 186 / 6e-52 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 78 / 4e-16 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 73 / 2e-14 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 73 / 2e-14 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 73 / 2e-14 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 69 / 6e-13 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143400 [exp] 64 / 2e-11 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 56 / 1e-08 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.012G020200 [exp] 48 / 3e-06 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G241900 [exp] 48 / 4e-06 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.015G008300 [exp] 47 / 5e-06 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037752 pacid=23167179 polypeptide=Lus10037752 locus=Lus10037752.g ID=Lus10037752.BGIv1.0 annot-version=v1.0 ATGGGCTATCATCTTCACCACGACGACAGATTCTTCCTAGATTCCGACATGCATACGTTCGACCACGTCGAAGTCGATGATGATGATCAATGGTCACTCC AACACGGCCGAAGCCAAGAGCTTGATGGTAATACCGATGATGATGATGATGAGGATTCTGATCAATGGCCAGTATTGGACGTCTCGAGTACTGTCAATCC TCATCTCGAAACCGAGGAGTCGTCGACACTGTCCATAGAGGACGTGATACGACACGCCGGGATGAGGATGATTCACATGTCGTCAAACAATCACGGATTA TCCGACCGAGATGTCAGGAACGTGGCGCTAACCGGATACCTCCTCTCTTCAGCCAACAACGTTGCGAAAGGACGGTTTGACCAGGCACTGAGTCTACTCG GTTTGTGCGATGGACTGTCGACCAGCCAGGCCAACCCGGTCGAACGAGTGGTTCATTACTTCTCACAAGCACTCCGAGCCAAGATAGCCGAAGAAACCGG AACGGTTCAAAACCTGATCATTAGTGGTGATTATAAAATATTTCGTCCCGATGACACATCGGTGCATTCCAGCCAAATAAGTCAGCACATAGCTGCCACG CAAGCGAAGGTGGAAGCGAGCAGGGTCAACTCGCCATGTTTTGCGGCACGGTTTGTGGAAATGCTGTTTCATTACGGAGCGTTGTTTGATGGTTTGGACA CGTGTACGGGGGATAATGAGCAGGAAAGGACGGTGGTGGAGTCGACGTATCTGAGTAAGCTGATCATGAACGCTGTGGTAGAATGA
AA sequence Show only first row Show all	>Lus10037752 pacid=23167179 polypeptide=Lus10037752 locus=Lus10037752.g ID=Lus10037752.BGIv1.0 annot-version=v1.0 MGYHLHHDDRFFLDSDMHTFDHVEVDDDDQWSLQHGRSQELDGNTDDDDDEDSDQWPVLDVSSTVNPHLETEESSTLSIEDVIRHAGMRMIHMSSNNHGL SDRDVRNVALTGYLLSSANNVAKGRFDQALSLLGLCDGLSTSQANPVERVVHYFSQALRAKIAEETGTVQNLIISGDYKIFRPDDTSVHSSQISQHIAAT QAKVEASRVNSPCFAARFVEMLFHYGALFDGLDTCTGDNEQERTVVESTYLSKLIMNAVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	4.0	0.8860
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10035044 [exp]	5.2	0.7444
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	6.6	0.8727
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	8.1	0.8727
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10024252 [exp]	8.8	0.6818
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	9.6	0.8609
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	11.2	0.8570
					Lus10011637 [exp]	11.7	0.8519
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	12.4	0.8510
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019960 [exp]	13.5	0.8245

Compare expression of checked genes

Lus10037752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.