Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 150 / 2e-39 GRAS RGL1 RGA-like 1 (.1) AT3G03450 146 / 4e-38 GRAS RGL2 RGA-like 2 (.1) AT5G17490 140 / 8e-36 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 140 / 9e-36 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 139 / 2e-35 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G55580 122 / 5e-30 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT2G04890 119 / 5e-29 GRAS SCL21 SCARECROW-like 21 (.1) AT1G07530 121 / 6e-29 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT4G17230 118 / 2e-28 GRAS SCL13 SCARECROW-like 13 (.1) AT2G37650 118 / 4e-28 GRAS SCL9 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041128 [exp] 572 / 0 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10016888 [exp] 510 / 2e-180 AT1G66350 125 / 5e-32 RGA-like 1 (.1) Lus10036459 [exp] 330 / 2e-107 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10023621 [exp] 329 / 7e-107 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10024252 [exp] 322 / 6e-104 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10016893 [exp] 323 / 7e-104 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016889 [exp] 313 / 9e-101 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10037758 [exp] 308 / 3e-98 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 299 / 7e-95 AT3G03450 189 / 5e-53 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 376 / 7e-125 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 362 / 4e-119 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 348 / 4e-114 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 309 / 7e-100 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 305 / 2e-97 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 273 / 3e-86 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 265 / 4e-82 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.015G008300 [exp] 147 / 3e-39 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.017G125200 [exp] 148 / 2e-38 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 146 / 1e-37 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037753 pacid=23167123 polypeptide=Lus10037753 locus=Lus10037753.g ID=Lus10037753.BGIv1.0 annot-version=v1.0 ATGGACGATCACGCCTCCATATTGCCGGCAAAAAAGAGATCCTGGCAGGAGATCTTTTTCCAGCCCACGAATCATGCTTCCCCGTTGACTTCCACCACGT TCCACCTCTTGAATCACCGAGGCAAAAGTGGAATCGGTCTTCATCATCCGGCGGTCAACTCCACGGCCGCCGCCGCCGGTCGACGGAAGCCGCTTTCAAT CGAGGAAGTGATCACGCTGGCAGCCACGAGGATATTCCGGTGTTCGAATTCGGGACAAGTCGGCATCCCTTCCTTGCTAAACATCCCTTTCGATCCGTCA ATTTCCGGCCTCTCCATCGATGACCAGAGCAACGTCAAGCTCGCCGAATACCTCCTCTCCTCCGCCGATAAAGTCGGCAACCATCAATACGACGACGCCA ATCGATGGATCGATCTCTGCGACTGCTTGTCTTCTCCCACGGGGAATCCCGTTCAGAGAATCGTCCACTATTTCGCCAGAGCCCTCCGGGAAAAGATCGA GAAAGAAACAGGACGAATCTACCCTTCGTCAAACGGCACGTCGTTTAATAGCCTGAGCAATGTTCTACGGCTCCCGAGCCCATCGATGGTTCTTTCCGTC CATGAACGGTTCCCTTACTACCGGATGCAACAGGCGGCGAGCGTACAAGCCATGGCCGAATCAGCGGGGAAGGCGAAGAGGATTCACGGCATCGATCTTC AGATTAAGTCCGGGCTACATTGGATCGGCTTGATGCAAGCGGTCGAAACTCGAACCGATTATCCAATCGAGTTTTTCAGGATTACTGCTCTCTGTACCGG TCAGGTTGAGCCGGTTCAGACGACAGGGGACCGGTTGAGCGAGTTTGCTCGTTCGAAGGGGATTAACTTTTGTTTCAAGATTGTGATGGTGGGGTGTGCG TTGGACCTGACCGATTCGATGTTCGAAATGGACGAGAAGGAATCAGTGATGGTTTACGCGGAGCACTCGTTCGCGACCATGATCAGTCAACCAGACCGTA TGGAAGTGTTGATGAGAGTGATGAGGAGGCTGAACCCGAGAATCATGGTTGTGACCGAAAAGGAAGGAAACAACAACTCGCCCCATTTCTCGACACGGTT CGTGGAGACACTGTTCAATTACGGTGCCGTTTTTGACAGCGTGGATACTTGCATGGGGAAAGGCGACAGAGACGAGGAGGAATGCAGGATGTATCTAGAG TCGGGAATCATGGGGAGGATGATAAGCAACATCGTGGCGTCTGAGGGAGAGGAGCGGGTGATTCGGGGGGTATCGGTGGATGTGTGGCGGGCGTTTTTCA GAAGGTTTGAGATGGTGGAGAAGAAGTTGAGTCCGGTAGTGTGGGAACAAATGAAGTTAGTGCAAGAGACCGCCGGAAACGGAGAGTTTTGTACGGTGGG GAGGGACGGTAAGGCGATGGTGATTGGATGGAAAGGCACGCCTATGTTCTCGGTCTCGACATGGAAATTCTTCCGCTCGGCTAAGCTTGTAAGTGGGAGG AAACACTTGAGGGTTGAGTTTGAGTAG
AA sequence Show only first row Show all	>Lus10037753 pacid=23167123 polypeptide=Lus10037753 locus=Lus10037753.g ID=Lus10037753.BGIv1.0 annot-version=v1.0 MDDHASILPAKKRSWQEIFFQPTNHASPLTSTTFHLLNHRGKSGIGLHHPAVNSTAAAAGRRKPLSIEEVITLAATRIFRCSNSGQVGIPSLLNIPFDPS ISGLSIDDQSNVKLAEYLLSSADKVGNHQYDDANRWIDLCDCLSSPTGNPVQRIVHYFARALREKIEKETGRIYPSSNGTSFNSLSNVLRLPSPSMVLSV HERFPYYRMQQAASVQAMAESAGKAKRIHGIDLQIKSGLHWIGLMQAVETRTDYPIEFFRITALCTGQVEPVQTTGDRLSEFARSKGINFCFKIVMVGCA LDLTDSMFEMDEKESVMVYAEHSFATMISQPDRMEVLMRVMRRLNPRIMVVTEKEGNNNSPHFSTRFVETLFNYGAVFDSVDTCMGKGDRDEEECRMYLE SGIMGRMISNIVASEGEERVIRGVSVDVWRAFFRRFEMVEKKLSPVVWEQMKLVQETAGNGEFCTVGRDGKAMVIGWKGTPMFSVSTWKFFRSAKLVSGR KHLRVEFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037753 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	8.1	0.9122
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	8.9	0.8871
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	11.4	0.8952
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	13.1	0.8562
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	15.0	0.8925
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	16.2	0.9071
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	17.4	0.8378
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	17.9	0.8933
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	23.0	0.8802
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	30.5	0.8762

Compare expression of checked genes

Lus10037753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.