Plant FIBer expression Database

Lus10037754 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66350 156 / 1e-43 GRAS RGL1 RGA-like 1 (.1)
AT5G17490 152 / 8e-42 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
AT1G14920 150 / 2e-41 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
AT2G01570 151 / 3e-41 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
AT3G03450 149 / 9e-41 GRAS RGL2 RGA-like 2 (.1)
AT1G55580 137 / 8e-37 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
AT5G48150 126 / 1e-32 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
AT3G50650 123 / 2e-31 GRAS SCL7 GRAS family transcription factor (.1)
AT5G66770 116 / 6e-29 GRAS GRAS family transcription factor (.1)
AT4G17230 115 / 2e-28 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016889
[exp]
588 / 0 AT1G66350 162 / 7e-44 RGA-like 1 (.1)
Lus10023621
[exp]
378 / 1e-128 AT3G03450 181 / 4e-50 RGA-like 2 (.1)
Lus10024252
[exp]
369 / 4e-125 AT3G03450 178 / 4e-49 RGA-like 2 (.1)
Lus10036459
[exp]
254 / 1e-80 AT3G03450 171 / 1e-46 RGA-like 2 (.1)
Lus10037753
[exp]
241 / 1e-75 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Lus10041128
[exp]
238 / 9e-75 AT1G66350 162 / 6e-44 RGA-like 1 (.1)
Lus10018101
[exp]
230 / 2e-72 AT2G01570 162 / 4e-44 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Lus10018098
[exp]
227 / 8e-71 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Lus10018100
[exp]
225 / 5e-70 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G143500
[exp]
261 / 4e-83 AT3G03450 182 / 8e-51 RGA-like 2 (.1)
Potri.010G143600
[exp]
259 / 2e-82 AT3G03450 205 / 7e-59 RGA-like 2 (.1)
Potri.010G143700
[exp]
253 / 2e-79 AT1G66350 182 / 2e-50 RGA-like 1 (.1)
Potri.010G143400
[exp]
243 / 5e-77 AT1G66350 207 / 1e-60 RGA-like 1 (.1)
Potri.002G195600
[exp]
221 / 8e-68 AT3G03450 209 / 2e-60 RGA-like 2 (.1)
Potri.014G120000
[exp]
195 / 6e-58 AT3G03450 174 / 1e-47 RGA-like 2 (.1)
Potri.010G143200
[exp]
191 / 4e-57 AT1G66350 198 / 8e-58 RGA-like 1 (.1)
Potri.010G110700
[exp]
158 / 1e-43 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Potri.008G131700
[exp]
157 / 2e-43 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Potri.004G089800
[exp]
151 / 4e-41 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03514 GRAS GRAS domain family
Representative CDS sequence
>Lus10037754 pacid=23167366 polypeptide=Lus10037754 locus=Lus10037754.g ID=Lus10037754.BGIv1.0 annot-version=v1.0
ATGCAACGTGGACAAATGCCGATATTGCAAATCCCACACTTAGCCGCCGTTCAAGCCATACTAGAAAACGTCACATCATCCAACAAGATCCACGTCATTG
ATCTCAAAATCGGCAGCGGCCAACAATGGGTCGCTCTCATGCAAGGCTTATTGACATCTCGGTCCGACGAGGACCGAGCTGGTGGGGCCTCGGTCGACCT
ACTTCGAATCACCGCAGTGGGGATCGCGGCCTTCGACCGGTCTCAGGTCCAAGAGACCGGGGACCGGCTGGCGAGCTTTGCTGGGAGCATCAACATACCG
TTCCGTTTTGAGGTGGTCGTGGTTACGGACGAAAAGGACGCGTCTGATTTCCGACCGGACCGGTTCGGACTCGAACCGAAGGAGGAATCGGTGGTCGTGT
ACTCGGAAGGTGTGTTCAAAACCCTAATCGGACAGCCAAGACGGATAGAGCAAGTGATGTTGACGCTGAAACGGATGAACCCGCGAATCATGGTCGTGGT
TGAGGTGGAGGCGAACCTCAACTCTCCAAATTTTGGGGGGCGGTTTGTGGAGACCATGTTCCACTACGGCACGATCTTCGAGGCTCTGGAGAGCACGATG
GAGCGGGACGATGCGTTTCGAGCGGGGATCGAGTCGGGGTTGCTTGGGCATCAAGTTAGTAACATATTGGCTAGCGAAGGAGAAGAGAGGCACGTGAGAG
GGGTGAAGATTGGCGTATGGAGGAAGTTCTTTGCTAGGTTTGGGATGGTGGAGGTTGAGCCGAGTGCGATGACATTGCACCAAGCCAAGTGGTTCCTTCA
TAGGTTTGTGAAGAATCAGAGTTACACGGTTGAGATGGATGGGAAGAGTTTGATTTTAGGGTTTAAACGTATGCCCATCCGTTGTGTGTCTACTTGGAAG
TTTGTTCGGATCGGTAGGCTGGTTAGAGACAATGAAGAGCTCAGAGTTGAGTTCTACTAA
AA sequence
>Lus10037754 pacid=23167366 polypeptide=Lus10037754 locus=Lus10037754.g ID=Lus10037754.BGIv1.0 annot-version=v1.0
MQRGQMPILQIPHLAAVQAILENVTSSNKIHVIDLKIGSGQQWVALMQGLLTSRSDEDRAGGASVDLLRITAVGIAAFDRSQVQETGDRLASFAGSINIP
FRFEVVVVTDEKDASDFRPDRFGLEPKEESVVVYSEGVFKTLIGQPRRIEQVMLTLKRMNPRIMVVVEVEANLNSPNFGGRFVETMFHYGTIFEALESTM
ERDDAFRAGIESGLLGHQVSNILASEGEERHVRGVKIGVWRKFFARFGMVEVEPSAMTLHQAKWFLHRFVKNQSYTVEMDGKSLILGFKRMPIRCVSTWK
FVRIGRLVRDNEELRVEFY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G66350 GRAS RGL1 RGA-like 1 (.1) Lus10037754
[exp]
0 1

Lus10037754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.