Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17490 62 / 1e-11 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 59 / 1e-10 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 59 / 2e-10 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT3G03450 58 / 4e-10 GRAS RGL2 RGA-like 2 (.1) AT1G66350 56 / 1e-09 GRAS RGL1 RGA-like 1 (.1) AT5G41920 56 / 2e-09 GRAS GRAS family transcription factor (.1) AT1G14920 55 / 4e-09 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G55580 54 / 7e-09 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G50420 53 / 2e-08 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016890 [exp] 273 / 2e-90 AT3G03450 152 / 5e-40 RGA-like 2 (.1) Lus10036459 [exp] 115 / 3e-30 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10016891 [exp] 105 / 5e-27 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10001451 [exp] 103 / 3e-26 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10018098 [exp] 102 / 6e-26 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10013767 [exp] 102 / 7e-26 AT1G14920 166 / 1e-45 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10018100 [exp] 102 / 7e-26 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037758 [exp] 102 / 1e-25 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10022414 [exp] 101 / 2e-25 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 114 / 1e-29 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 113 / 1e-29 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143500 [exp] 108 / 1e-27 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 107 / 1e-27 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143400 [exp] 96 / 1e-23 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 78 / 3e-17 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 75 / 4e-16 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.012G020200 [exp] 65 / 1e-12 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G326000 [exp] 62 / 2e-11 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.015G008300 [exp] 60 / 5e-11 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037755 pacid=23167245 polypeptide=Lus10037755 locus=Lus10037755.g ID=Lus10037755.BGIv1.0 annot-version=v1.0 ATGATGAAGTTCGTGAGGAGCCTGCACCCGTGGGTGATGGTGGTGATCGAGACGGAGGCGAATCACAACTCTCCGGACTTCGGGCAACGTTTCGTGGAGG CGTTGTTTACGTCGGTGGCGCGGTTCGACTGTGTGGCGGAGTGTATAGAGGATGATTGTACGGCAGAGGCGAGGACGGCGGTGGAGGAGGTGTATTTGAA CGAGAGGATAAGGAACATGGTGGTGGCGGAGAGAGACGATCGGGTGATTCGAGACGTGAGGATTGCGGTGTGGAGGAAGTATTTCGCGAGGTGTAGGATG CTTGAGATTCAGTTGAGTAAGTTGGCGTTGAACCACGCGAAGCTTGTGGTAAGCAGGCTCCCCTGTGCGGCGTCGTGTTTGGTTCGGGTTGATAATAGGA AGAGTTTGTTGCTGGGCTGGAAGGATACGCCGTTGGTGTTTGTTTCGGCCTGGAAGTTCGTTGGGCGTAATAGGAAGCCCAGAATCGTTGTAGACGATAC CACGTCGTCTCTGATTGCCTAA
AA sequence Show only first row Show all	>Lus10037755 pacid=23167245 polypeptide=Lus10037755 locus=Lus10037755.g ID=Lus10037755.BGIv1.0 annot-version=v1.0 MMKFVRSLHPWVMVVIETEANHNSPDFGQRFVEALFTSVARFDCVAECIEDDCTAEARTAVEEVYLNERIRNMVVAERDDRVIRDVRIAVWRKYFARCRM LEIQLSKLALNHAKLVVSRLPCAASCLVRVDNRKSLLLGWKDTPLVFVSAWKFVGRNRKPRIVVDDTTSSLIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037755 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Lus10039483 [exp]	13.6	0.5799
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	16.2	0.6293
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	19.5	0.6149
					Lus10028027 [exp]	22.1	0.5601
AT5G58840			Subtilase family protein (.1)		Lus10016483 [exp]	22.4	0.5559
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010699 [exp]	45.2	0.5398
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	47.1	0.5533
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	48.5	0.5625
					Lus10038720 [exp]	55.5	0.5444
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	56.3	0.5435

Compare expression of checked genes

Lus10037755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.