Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 150 / 7e-40 GRAS RGL2 RGA-like 2 (.1) AT5G66770 138 / 3e-35 GRAS GRAS family transcription factor (.1) AT2G29065 131 / 9e-33 GRAS family transcription factor (.1) AT3G50650 129 / 2e-32 GRAS SCL7 GRAS family transcription factor (.1) AT5G17490 128 / 6e-32 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G41920 124 / 2e-31 GRAS GRAS family transcription factor (.1) AT1G66350 125 / 6e-31 GRAS RGL1 RGA-like 1 (.1) AT5G59450 125 / 1e-30 GRAS SCL11 GRAS family transcription factor (.1) AT1G07520 122 / 1e-29 GRAS GRAS family transcription factor (.1) AT2G01570 119 / 1e-28 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016891 [exp] 807 / 0 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 677 / 0 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10037758 [exp] 405 / 1e-136 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 398 / 4e-134 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 377 / 1e-125 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016894 [exp] 318 / 7e-105 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10018098 [exp] 276 / 6e-88 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10001451 [exp] 271 / 3e-86 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10022414 [exp] 272 / 4e-86 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 387 / 4e-130 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 355 / 3e-117 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 338 / 7e-111 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143400 [exp] 294 / 9e-95 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 291 / 1e-92 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 272 / 1e-86 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 228 / 1e-68 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.007G026300 [exp] 152 / 2e-40 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.005G123800 [exp] 150 / 1e-39 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.012G020200 [exp] 130 / 3e-33 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037756 pacid=23167165 polypeptide=Lus10037756 locus=Lus10037756.g ID=Lus10037756.BGIv1.0 annot-version=v1.0 ATGGCAAATAAAGGCATACTGATTCCGCCTCCTCTGTGCGTAGATGATTTCAGCACCGATGATCTCGATGTCTACGACATTACAAGCTTCCGGCATCTCC TTCCTCAAAGTACATCCTCGCCGGCCCGTAATGTTATTCCACCAAGAAGTGCGGCATTGTCAGTTGAAGAGCTCGTCAGGATTGCTGCATCAAAGTTCAT ACTGTCTCATTCCAACGATTCCTCCTTCCATCTCTCAACCACGCTCTCCGATTCTGAATCGGAGAGCGTGGAGCTCGCGCAGCTTCTCCTTGAAGCTGCC GAGAAAGTTGCAAGGGGTGACAGCGCCGAGACATTTCTCGAGAACTGTGACCTCATGTCGTCCCCATCAGGAACCCCGATTCAGAGACTAGTCTTCTACT ACTCTCGAGCTTTACGAGTCCGGATTGGTCAAGAAATCGGAGGAATCGCGACCAAAGATCAATCCACGGAGGAGGATCTTTACAAAGTGGTGATGACTCC GAGCTTCCGGTTCGTGGAATTCCATAGGAAAATACCATTTTCTCCGGTTGCACAATTCGCCGGGATCCAATCCATTGTCGAACACGTCGAGAAATCCCGA AAAATCCACGTGGTCGATTTCGGCATTCGGAACGGACATCAATGGACCATCCTGATGCAAGCTCTAGCATCAAGAAAACGACGCCGGGTGAAGCACCTAA AGATAACTGCCGTAGCCACTTTAGGCAAGCACTTAATCGAACAGAGGGGTAATATGCTGCTCAGCTTCGCGCAAGAAATGAACCTGCCCTGCAGCTTCCA CGTGGTGATGGTCCACGATCTGACCGAGCTGAGACGCGACCATTTCGAGATCGAGCCGGAAGAGGCCGTGGCGGTTCTAGCCGAATACATTATCAATACT TTGACCGAACCTGTTGAGCGGATTGACTCGGTTATCCGAGCGATCAGAAGCTTGTACCCGGCCGTGATGGTGGTGACGGAGATGGAGGTGAACATAAACT CTCCTGTTTTCGTGAACCGGTTCGTGGAGTCGTTTTTCTTCGCAAGCGCGTACTTTGATTGCTTCGAGGATTGCATGGCTCGGGACGAGGAAACGAGGAT ATACGGAGAGTCGATGCTCTTTGGAGAAGGGAGTAAAGTTGTGGTGGCGGAGGAGAGGTCCATAAGGAACATGAAGGCAGATGTTTGGAGGGTTTATTTC AAGAGGATGGGGATGATGGAGGCGGCTTTGAGTCAATCATCGTTGTATCAGGCAGAGTTGGTGGTTAAGAAGGTGCCTCGTTGGAGTCAGTGTACGATAG ATACAGATGGGAAGAGCTTGATTGTTGGTTGGAAGGGTACGCCCATTCTTTCTGTCACTGCTTGGAAGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10037756 pacid=23167165 polypeptide=Lus10037756 locus=Lus10037756.g ID=Lus10037756.BGIv1.0 annot-version=v1.0 MANKGILIPPPLCVDDFSTDDLDVYDITSFRHLLPQSTSSPARNVIPPRSAALSVEELVRIAASKFILSHSNDSSFHLSTTLSDSESESVELAQLLLEAA EKVARGDSAETFLENCDLMSSPSGTPIQRLVFYYSRALRVRIGQEIGGIATKDQSTEEDLYKVVMTPSFRFVEFHRKIPFSPVAQFAGIQSIVEHVEKSR KIHVVDFGIRNGHQWTILMQALASRKRRRVKHLKITAVATLGKHLIEQRGNMLLSFAQEMNLPCSFHVVMVHDLTELRRDHFEIEPEEAVAVLAEYIINT LTEPVERIDSVIRAIRSLYPAVMVVTEMEVNINSPVFVNRFVESFFFASAYFDCFEDCMARDEETRIYGESMLFGEGSKVVVAEERSIRNMKADVWRVYF KRMGMMEAALSQSSLYQAELVVKKVPRWSQCTIDTDGKSLIVGWKGTPILSVTAWKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	0	1
					Lus10024160 [exp]	1.7	0.7682
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	3.7	0.7431
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	5.2	0.6108
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	8.8	0.6047
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10021041 [exp]	11.2	0.6930
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10035834 [exp]	11.5	0.5518
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10001149 [exp]	15.0	0.6564
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	16.7	0.6372
					Lus10008440 [exp]	17.0	0.6541
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	24.1	0.6409

Compare expression of checked genes

Lus10037756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.