Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07520 64 / 2e-11 GRAS GRAS family transcription factor (.1) AT4G08250 63 / 4e-11 GRAS GRAS family transcription factor (.1) AT2G29065 62 / 8e-11 GRAS family transcription factor (.1) AT1G63100 61 / 2e-10 GRAS GRAS family transcription factor (.1) AT4G37650 60 / 4e-10 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G03450 60 / 5e-10 GRAS RGL2 RGA-like 2 (.1) AT1G66350 59 / 6e-10 GRAS RGL1 RGA-like 1 (.1) AT4G00150 59 / 7e-10 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT4G17230 59 / 1e-09 GRAS SCL13 SCARECROW-like 13 (.1) AT1G14920 59 / 1e-09 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 258 / 2e-82 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016893 [exp] 255 / 6e-81 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016897 [exp] 253 / 3e-80 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016894 [exp] 180 / 6e-54 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10037756 [exp] 165 / 1e-47 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 157 / 6e-45 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016895 [exp] 148 / 4e-44 AT3G03450 112 / 5e-29 RGA-like 2 (.1) Lus10016892 [exp] 153 / 3e-43 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10023621 [exp] 137 / 7e-37 AT3G03450 181 / 4e-50 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143700 [exp] 176 / 5e-51 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 169 / 7e-49 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 163 / 1e-46 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 160 / 4e-46 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.014G120000 [exp] 151 / 3e-42 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.002G195600 [exp] 149 / 2e-41 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 113 / 2e-28 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.005G175300 [exp] 69 / 4e-13 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 69 / 5e-13 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.004G089800 [exp] 68 / 1e-12 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037757 pacid=23167375 polypeptide=Lus10037757 locus=Lus10037757.g ID=Lus10037757.BGIv1.0 annot-version=v1.0 ATGGCCGACCATGTCTTCTCCAGTGGAATTAAAGATCATCACGGCCAGATGATCCACAGTAGACAAGTATTTCTAGATGAACTCCTTGCTGAAATGCGTA AGAATTCGAATCCTGCTAAACCGACCAATTACATCCCACTTGAGGCGGCTGATTCAGCAGGGCTATCAACCGAAGAACTTTTGAGGATTGCAGGAGCCAA GTTTATACAGTCCTCTAGTTCCAGATCAGGAGATTCGGAAACGATGAGCCCATTCGAAAATTTCTTCTCCGCCGGCGGCCTTTCTGAAGAACAGCTTAAA AATGTGGAGCTGGCTGAATTCCTGCTCACCGCTGCTGAGAAAGTTGGAGATGAACAGTTGGAAAAAGCCAGAGATTTGTTGACTCAGTACTGTGATCTTC AGTCGTCTCCTACCAGAGACCCCGTCCAACGATTAGTTTACTACTTCTCTCGTGCGCTTCGAGAGAGGATCGATTCCCGGAGGGGGAAAATCAAGCAAAC TGTGCTGCTGCAAAAATCAGGCTTGGTTCAAGAGATAACGATGCCGACAAGGGAATACTTCCTCGAGTTCCGCCAGAAGGTGCCGTTCGGACCAGTTTCG CAGTTCACTGCCATCCAAGCGATAGTGGACAGCGTAGCAAAGGCAACGAGGATTCACATTGTTGATTTCAACATCAAGCACAGAGAGCAATGGATCATCT TTATGCAAGCATTGGTTGAGGAAAATCGAAAAAATCCGGTGGAGCATCTCAAGATAACTGCAATTGGGACAATGGGAAGGACATGTTGGAAGAGACTGGT CAAAGGTTGA
AA sequence Show only first row Show all	>Lus10037757 pacid=23167375 polypeptide=Lus10037757 locus=Lus10037757.g ID=Lus10037757.BGIv1.0 annot-version=v1.0 MADHVFSSGIKDHHGQMIHSRQVFLDELLAEMRKNSNPAKPTNYIPLEAADSAGLSTEELLRIAGAKFIQSSSSRSGDSETMSPFENFFSAGGLSEEQLK NVELAEFLLTAAEKVGDEQLEKARDLLTQYCDLQSSPTRDPVQRLVYYFSRALRERIDSRRGKIKQTVLLQKSGLVQEITMPTREYFLEFRQKVPFGPVS QFTAIQAIVDSVAKATRIHIVDFNIKHREQWIIFMQALVEENRKNPVEHLKITAIGTMGRTCWKRLVKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	0	1
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	1.4	0.9664
AT4G15620			Uncharacterised protein family...		Lus10035168 [exp]	2.8	0.8899
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	3.0	0.9223
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	3.2	0.8708
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	3.6	0.8523
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	3.7	0.9405
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	3.9	0.9073
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	4.9	0.9173
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	7.7	0.9058
					Lus10022950 [exp]	8.7	0.8224

Compare expression of checked genes

Lus10037757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.