Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 186 / 6e-52 GRAS RGL2 RGA-like 2 (.1) AT1G66350 176 / 2e-48 GRAS RGL1 RGA-like 1 (.1) AT2G01570 170 / 9e-46 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 169 / 9e-46 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 164 / 4e-44 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G59450 151 / 4e-39 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 152 / 5e-39 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 146 / 5e-37 GRAS GRAS family transcription factor (.1) AT2G29060 145 / 1e-36 GRAS GRAS family transcription factor (.1) AT1G07530 142 / 2e-35 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016897 [exp] 1060 / 0 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 703 / 0 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016894 [exp] 536 / 0 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10037756 [exp] 436 / 1e-148 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 426 / 6e-145 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10016892 [exp] 423 / 1e-143 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10036459 [exp] 333 / 1e-107 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10023621 [exp] 323 / 1e-103 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10037753 [exp] 318 / 2e-102 AT1G66350 156 / 8e-42 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 471 / 2e-161 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 458 / 2e-155 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 439 / 1e-148 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 400 / 4e-133 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 380 / 1e-126 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.014G120000 [exp] 334 / 7e-108 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 317 / 1e-102 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 179 / 1e-48 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 173 / 1e-46 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G008300 [exp] 169 / 1e-46 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10037758 pacid=23167079 polypeptide=Lus10037758 locus=Lus10037758.g ID=Lus10037758.BGIv1.0 annot-version=v1.0 ATGGCGCATCAGATCTCCTCATTCCAGTTCAATCATGGCGGAATTCAAGACCAAAACCCTGCCGTGTCGAATCAAAGCTTCGACTCCGATCCAATCAGCT TATTCGAAAGTTGGATAGTAGCTAGGGAAGATTCATCTGACCGCGATCACCAATCGCTGTTTCCGAGCTACGACAACGACGAAGATTATCCGCCGATTCA CCACCAGAGTATTATGATCACCGATCCTCAAGGAATCTCGGATGATTTCAACGGCATTGTCAACAGGCAAGTATCCGTAGACAGTTCAGATGAACAGATC ATTAACGGAAATCACGAAATCCCCAATTCTGATTCAGCATCATCTTTATTTGACATGCTGAGAGCCGGTAGAAATGGTTCAAGGAAACGGAATAGTAGCT TTCGTACAGTTCATAAATCGAGCGATGATAGTGTAATTGATGCGGATGATTCGGTAGGATTGTCAACCGAAGAGCTTATAAGAATCGCCGGAGCTAAGTT TATCCATTTGTCTTCGGAATCGGGCGATTCCGTCACAAGCTCTTTTGACCTAACTTTCTCTGGCCTTTCCGATGAAGAGTTGAAAAACGTGGAGCTAGCT GAATTCCTGCTGATGGCTGCCGAAAAAATCGGGGACGAACAGTTCGAAAGGGCCGGAAGTTTGTTGACTGAGTGTGATCTCCAGTCGTCTGCTACTGGAG ATCCGGTCCAACGATTAGTGTACTACTTCTCTCGAGCTCTTTGGGAGAGGATCGACCGCCAGACCAAACAGAAAACTGTGGAGAAATCTCCCAAGATTCC GAAAGTTCAAGCGATGATGATGCCGCCAAGGGAATGCTTCCTCGAGTTCTACGAGAAGGTACCATTCGCGCAAGTTTCGGAGTTTGCTGCTATCCAAGCT GTTGTGGATAGTGTAGCTACATCAAGAAGGATCCACATTGTCGATTTCAATATTAAAAATGGAGAGCAATGGACAATTTTCATGCAAGCATTGGTTTCTA GAGTGGAAAATCCAGTGGATCATCTCAAGATAACTGCAATTGGGACAATGGGGAAAGAAATGCTGGAAGAGACTGGGAAAAGATTGATTGGATTTGCAGA AGCTATGGAATTATCTTTCACTTTCAAGCTGGTGATGGTGGAAGACTTGTTGGACCTTAAGGAGGAAATGTTCGAGATAGATTGCGACGAAACGGTTGCA GTATTGTCGGAATACCTCTTCACAACTCTAATCTCGTTCGTAGTGAAGTTGGACTATGTGATGAAGATGATCTGGAAGATAAAACCATGTGTGATGGTTG TGACCGAGGTCGAATCGAATCATAACTCCCCAATTTTCGTTAACCGGTTCATCGAGGCTCTCTTCTACGTGAGTGCTTATTTTGATTGCTTGGAGACTTG TATGGAGAGGGACAACCCGCACAGGAAGTTTGCAGAGTCTTCTTTTTTCGGGGAAGGGACCAAGATCGTGGTGGCTAACGAAGGGGAAGAGAGGGCGATT CGAAACGTGAAGATGGATGTTTGGAGGGCTTATTTTCGGAGGTTCGGGATGGAAGAGGCGGATTTGAGCTTGTCTTGTTTGTACCAAGCGGAGTTGGTGG CTAAGAAGTTTCCGTGTTGGAGGTCTTGCACGGTTGATGTGGATGGTAAGAGCCTTATTGTTGGGTGGAAAGGCACACCGATTCATTCTGTTACTGCCTG GAACTTTAACTATGGATGA
AA sequence Show only first row Show all	>Lus10037758 pacid=23167079 polypeptide=Lus10037758 locus=Lus10037758.g ID=Lus10037758.BGIv1.0 annot-version=v1.0 MAHQISSFQFNHGGIQDQNPAVSNQSFDSDPISLFESWIVAREDSSDRDHQSLFPSYDNDEDYPPIHHQSIMITDPQGISDDFNGIVNRQVSVDSSDEQI INGNHEIPNSDSASSLFDMLRAGRNGSRKRNSSFRTVHKSSDDSVIDADDSVGLSTEELIRIAGAKFIHLSSESGDSVTSSFDLTFSGLSDEELKNVELA EFLLMAAEKIGDEQFERAGSLLTECDLQSSATGDPVQRLVYYFSRALWERIDRQTKQKTVEKSPKIPKVQAMMMPPRECFLEFYEKVPFAQVSEFAAIQA VVDSVATSRRIHIVDFNIKNGEQWTIFMQALVSRVENPVDHLKITAIGTMGKEMLEETGKRLIGFAEAMELSFTFKLVMVEDLLDLKEEMFEIDCDETVA VLSEYLFTTLISFVVKLDYVMKMIWKIKPCVMVVTEVESNHNSPIFVNRFIEALFYVSAYFDCLETCMERDNPHRKFAESSFFGEGTKIVVANEGEERAI RNVKMDVWRAYFRRFGMEEADLSLSCLYQAELVAKKFPCWRSCTVDVDGKSLIVGWKGTPIHSVTAWNFNYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10037758 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	2.6	0.8248
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	7.5	0.7870
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10000007 [exp]	8.4	0.7728
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	14.6	0.8001
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	18.0	0.7499
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	22.7	0.7839
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	25.5	0.7611
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	30.1	0.7700
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	33.0	0.7492
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	33.1	0.7469

Compare expression of checked genes

Lus10037758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.