Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32730 266 / 4e-77 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 214 / 2e-58 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G09370 176 / 2e-47 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 173 / 7e-46 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G00540 135 / 4e-34 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT2G13960 100 / 4e-25 MYB Homeodomain-like superfamily protein (.1.2) AT5G40360 90 / 6e-19 MYB ATMYB115 myb domain protein 115 (.1) AT3G09230 90 / 7e-19 MYB ATMYB1 myb domain protein 1 (.1) AT4G18770 89 / 2e-18 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 86 / 2e-17 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038623 [exp] 1223 / 0 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10011687 [exp] 480 / 7e-152 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 456 / 6e-146 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10024394 [exp] 169 / 8e-45 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10025351 [exp] 167 / 3e-44 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 124 / 8e-30 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10028250 [exp] 85 / 4e-17 AT3G55730 306 / 2e-101 myb domain protein 109 (.1) Lus10027695 [exp] 86 / 5e-17 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10040239 [exp] 85 / 5e-17 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241700 [exp] 383 / 3e-118 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 342 / 5e-103 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G085600 [exp] 171 / 2e-45 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 166 / 2e-43 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 133 / 7e-33 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.008G062700 [exp] 92 / 2e-19 AT3G55730 290 / 7e-95 myb domain protein 109 (.1) Potri.001G347200 [exp] 91 / 6e-19 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.010G195000 [exp] 90 / 1e-18 AT3G55730 295 / 7e-97 myb domain protein 109 (.1) Potri.005G118500 [exp] 89 / 2e-18 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.014G035100 [exp] 82 / 7e-17 AT4G37260 183 / 1e-56 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037898 pacid=23163884 polypeptide=Lus10037898 locus=Lus10037898.g ID=Lus10037898.BGIv1.0 annot-version=v1.0 ATGGGAACTGACAAATTAGTTTCTACTCCCTCGGATGGGGTGAATGATGGTGCTCAGAAAAGCCGGCCTCATCAGGGGAGAACCTCAGGTCCTACTAGGC GTTCAACAAAGGGGCAATGGACAGCTGAAGAGGATGAGATTCTATGCCAGGCTGTTAAACACTTCAAGGGGAAGAATTGGAAAAAAATTGTTTGGCCTGA AAGCATTCTGACTGAATATAGTTCATCTGTTATTGCTATCTTCTTGTCTTCAGCTGAATGCTTCAAGGATCGAACTGATGTCCAGTGCCTGCATAGATGG CAGAAAGTCTTAAATCCAGAACTTGTGAAAGGGCCATGGTCAGAACAGGAAGATGAAATAATAATTGCATCGGTCCACAAGTATGGATCAACAAAGTGGT CTGCAATTGCTCAACATTTACCTGGCCGCATTGGGAAGCAATGTAGAGAAAGGACAGATAATTCTATAAAGAACCACTGGAACAGTTCTTTGAAAAAGAA GCTGGAGTCTTACTTGGCATCAGGTCTACTAGAGCAGGTGCAAGGCTTTTCTCCAGTTGTAAATCAAAATCAATCCACACCTTCTTCTTCTTTGAGGCTG CAGAATAGTGGAGATGATAGTTACAGTAGTCGAAAATGTGGCACTGAGGCAGAGGAAATATCTGAATGCAGTCAAGAGTCGAATGTCATGGCTTGTTCTC AGTCAGCTAGTGATTTGGGGAATTCCATTGTCAATTCTAGAGCAGAAGTCCATTTACCACAAGATTCTCGCCTTGGAAATATCCCCATTTCCACCGCAGA AGTTCCTTGTCAAGCAGGTTGCTCCTCAAACTTTCTTCCGCAGAACTATCCTCATATGTCATTTCATTCAGCAAGCGCTGCTTACGAATTTAACTCAGAG GGTCCATCAAACACGCATCTAATGGAACTAGGAGCAGGGGTTTTAAGTGCTCCAAGCCATTGTATAGCTGCTCATGAAAACCAAGAAGTAGCCTATCTTT CATCGGCAGATTCAATGGGCTTCAGTGCTCCTGTTCGTTTGGAAGATATGGCAGTATGTTCTACTATACCTGAACAAATTCTTATATCTGATGAGGAATT TTGCAAGATCTTATCGTCAGAAGCAACAAGTGGCGGAATCACCCCCCAAAATCATATTGAGAATTCAAATATGGTTGACTCTCGTGGATGCAATGATTCA CTGCCTTGTCCGTCAGATCTGCAGGATACAGGATCTTTATGCTATGAGCCTCCTCGGTTCCCAATTTTGGATCTTCCGTTTCTCAATTGTGATCTTGTAC AACCGGATAGTGATCTTCAGCAAGTATACAGTCCTCTTGGTCTTAGGCAGTTTTTGATGTCTTCATCCAACTGCATCAGTCCGTTTAGGCTGTGGGATTC ACCACCTCGAAGTACCAGTTCTGATGCAGTTCTGAAGAGTGCTGCTAAGTCTTTCACTGGTACACCATCCATTTTGAAGAAAAGGACCCGAGATTTGTGG TCGCCTTTGTCAGAAACACGAAAAGACAAAAGGCTTGGGACTGGCATTGCTTCCACTTTGACGAAAGAGTGTCAAAATCTGGATGCTATATTTGATGAGA CAGAGACTGATGTGATATCTCCGATGTCTAACAAGAAAAGTAAGCACGCACCTTGGTTTGAACATAAAGAAAATTTAGATCCTTGTCTTATAAGTGCAAA AGATGATGGAAAAGAGAAGCGGCAAGAACTTTTTATTGTTCCGGAGGACAGTGGTAACTGCGATAACACCCAAAAGAATGTGGAGAAAGAAATCAATTGC AGTCGTCCCAACATCAAAGATCATCCGTTTGTTGGTCACCAAATTCCTTCGAGAATAGTTAATGACGAAAGCTCGAATGATCTGTCACTATATTCTCCTC ATGCTCAAACTCGGAGAAGCTTGGTTGCTTACAAGAAGAATGAAGGTCAATTGGTTGCTATTAGAGCAAAAAAATATGGACCTTCAACAGAAACTACATC TGCGGAGAATGCAGTTGCTAACACTAGGAATGATGGTGACATCTTTGCCATTCTGGTTCCTTATTTCTATGATAATGGTGTTTGGGTTTACAGCTTTGGT GGGACTCCTTACAAGAGAAGCATTGAATCTCCTTCAGCATGGAAATCTCCATGGTTCGTCAACTCCTTCATCCATGGACAAACAGATATTTCAGTCCAGG ATATTGGATATCACTACGACGCTCTCTCACTTTTGAAGCAGTTGAGTGAGCAAACTGCGGCTGCATGTGCTGATGCCATGGAAATTCTAAGGTATGAAAC TCCCCAAAGCATAAGGAAAGGAAGAGGAAATAATAGCCTGAATTCGGAGCAAGATGAGCGTTATAATGGTTCCCATTTGGCGAATATCTCGAGCAAAGGA AGAGTGCTGGACTTCAGCGAATGCGGAACACCTGAGAAAGGAATAATGGAGAAGGTGAAGTGTTGTAATACTACTACTCCGCCTTCGTCGTCCTCTTACC TGTTGAGAAGTTTCAGATAA
AA sequence Show only first row Show all	>Lus10037898 pacid=23163884 polypeptide=Lus10037898 locus=Lus10037898.g ID=Lus10037898.BGIv1.0 annot-version=v1.0 MGTDKLVSTPSDGVNDGAQKSRPHQGRTSGPTRRSTKGQWTAEEDEILCQAVKHFKGKNWKKIVWPESILTEYSSSVIAIFLSSAECFKDRTDVQCLHRW QKVLNPELVKGPWSEQEDEIIIASVHKYGSTKWSAIAQHLPGRIGKQCRERTDNSIKNHWNSSLKKKLESYLASGLLEQVQGFSPVVNQNQSTPSSSLRL QNSGDDSYSSRKCGTEAEEISECSQESNVMACSQSASDLGNSIVNSRAEVHLPQDSRLGNIPISTAEVPCQAGCSSNFLPQNYPHMSFHSASAAYEFNSE GPSNTHLMELGAGVLSAPSHCIAAHENQEVAYLSSADSMGFSAPVRLEDMAVCSTIPEQILISDEEFCKILSSEATSGGITPQNHIENSNMVDSRGCNDS LPCPSDLQDTGSLCYEPPRFPILDLPFLNCDLVQPDSDLQQVYSPLGLRQFLMSSSNCISPFRLWDSPPRSTSSDAVLKSAAKSFTGTPSILKKRTRDLW SPLSETRKDKRLGTGIASTLTKECQNLDAIFDETETDVISPMSNKKSKHAPWFEHKENLDPCLISAKDDGKEKRQELFIVPEDSGNCDNTQKNVEKEINC SRPNIKDHPFVGHQIPSRIVNDESSNDLSLYSPHAQTRRSLVAYKKNEGQLVAIRAKKYGPSTETTSAENAVANTRNDGDIFAILVPYFYDNGVWVYSFG GTPYKRSIESPSAWKSPWFVNSFIHGQTDISVQDIGYHYDALSLLKQLSEQTAAACADAMEILRYETPQSIRKGRGNNSLNSEQDERYNGSHLANISSKG RVLDFSECGTPEKGIMEKVKCCNTTTPPSSSSYLLRSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10037898 [exp]	0	1
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	8.5	0.7787
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	11.1	0.8192
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	13.6	0.8092
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	19.1	0.8001
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	25.1	0.7741
AT1G71110			unknown protein		Lus10035272 [exp]	27.7	0.7670
AT4G13150			unknown protein		Lus10038175 [exp]	32.3	0.7734
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	36.9	0.7335
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	37.1	0.7823
					Lus10043150 [exp]	39.4	0.7643

Compare expression of checked genes

Lus10037898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.