Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41800 305 / 1e-99 Transmembrane amino acid transporter family protein (.1) AT1G08230 283 / 2e-91 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT1G48640 133 / 2e-34 Transmembrane amino acid transporter family protein (.1) AT2G39890 123 / 6e-31 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 118 / 2e-29 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G36590 116 / 2e-28 ATPROT3, ProT3 proline transporter 3 (.1) AT5G40780 113 / 3e-27 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 109 / 6e-26 Transmembrane amino acid transporter family protein (.1) AT1G24400 84 / 3e-17 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G09220 76 / 1e-14 AAP2 amino acid permease 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038639 [exp] 484 / 5e-170 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 316 / 8e-104 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 194 / 3e-57 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037914 [exp] 159 / 2e-44 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038640 [exp] 147 / 7e-40 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10014605 [exp] 115 / 8e-28 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10009877 [exp] 106 / 1e-24 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10001908 [exp] 105 / 1e-24 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 100 / 8e-23 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 429 / 4e-148 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 374 / 1e-126 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 345 / 1e-115 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 229 / 2e-70 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 229 / 3e-70 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 150 / 2e-40 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.015G091600 [exp] 114 / 1e-27 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G194600 [exp] 110 / 2e-26 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G062900 [exp] 109 / 6e-26 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.001G335300 [exp] 106 / 6e-25 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037913 pacid=23163889 polypeptide=Lus10037913 locus=Lus10037913.g ID=Lus10037913.BGIv1.0 annot-version=v1.0 ATGGAACACTTGAGCAAGCAAGTTAGCAATAAAAGTAAGTTTTTCGATAGGGAAATAGCAACAAATCTGATGGCTCCAAACTCCATGAACATTCTGACAG CAGACAGACAAAACACTGACTCTCGTCCACAGCTTGATGCTGGAGCTTTTTTTGTCCTGCAATCCAAAGCTAACAGATCATGGGTTCATTGTGGGTACCA TTTGACAACATCAATAGTTGGTCCAATTATATTCAGTCTTCCATTTGCTCTGGCTCTGCTTGGCTGGGGACCTGGAATTGCCTGCATATCTCTATCAGCA CTAGTAACTTTCTACTCCTACAATCTCCCGTCTTTGGTTCTGGAGCATCATGCTCAGCTCGGAAGGAGCCACCTCCGATTTCGCGACATGGCTGAAGATC TCCTAGGACCTGGATGGGGGGAAGTTCTTCGTTGGGCCACTTCAGTTCGCTATATGCTATGTGCTTGTGCCACTGCTGGTTCTATATACATTGGAAATTC AAGGAAAGCGCCTCCAAGGGACTACTCAGTGAATGGTTCTCAACTGAACCACTTGTTCGGCTCCATCAATGGGGTTTCAATCATTGCCACAACTTTTGCT AGTGGGATCATCCCTGAAATACAGTCAACAGTTGCTCCACCAGTGAAAGGCAAAATGTTCAAAGGCTTGTGCATTTGCTATGCTGTTATAATCTCCGCAT ACTTCAGTGTTGCAGTCTCTGGCTACTGGACATTTGGGAATTCCTCCAAATCGATCATTCTCACAAACTTCGTGGATGATGATGGGAAGCCATTGTTGCC AATTTGGTTCCTTCTCTTGACCAACATCTTTGCTCTCATGCAGTTGGCTGCTGCCATCACTGTGATACGTATGTTTTGCAGATATACTTGCAGCCAGCCA ACAAACGAGATGTTTGAGAGATGGTTTTCAGACCCAAAGAAGCAATTTGCGACGAGAAACGTGGCCCCGCGGCTGGTGTTCAGATCACTGACAGTGGTAG TGGCTACACTGATTGCAGCAATGCTGCCTTTCTTTGGGGATATCATGGCCTTCCTTGGAGCATTCGGATGCATCCCTTTGGACTATATCCTACCAATGGT TTTCTACAACACAACGTTCAAGCCTCCTAGGAAAAGCCTCATCTTTTGGGGGAACAAAACCATTGCTGTAATTTCATCCATTCTGGCTGAAGTTGGTGGA GTGGCCTCGGTTAGACAGATAATACTTGACGCCAAAACTTACAGCATTTTTGCTGATGTTACAATGTGA
AA sequence Show only first row Show all	>Lus10037913 pacid=23163889 polypeptide=Lus10037913 locus=Lus10037913.g ID=Lus10037913.BGIv1.0 annot-version=v1.0 MEHLSKQVSNKSKFFDREIATNLMAPNSMNILTADRQNTDSRPQLDAGAFFVLQSKANRSWVHCGYHLTTSIVGPIIFSLPFALALLGWGPGIACISLSA LVTFYSYNLPSLVLEHHAQLGRSHLRFRDMAEDLLGPGWGEVLRWATSVRYMLCACATAGSIYIGNSRKAPPRDYSVNGSQLNHLFGSINGVSIIATTFA SGIIPEIQSTVAPPVKGKMFKGLCICYAVIISAYFSVAVSGYWTFGNSSKSIILTNFVDDDGKPLLPIWFLLLTNIFALMQLAAAITVIRMFCRYTCSQP TNEMFERWFSDPKKQFATRNVAPRLVFRSLTVVVATLIAAMLPFFGDIMAFLGAFGCIPLDYILPMVFYNTTFKPPRKSLIFWGNKTIAVISSILAEVGG VASVRQIILDAKTYSIFADVTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037913 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	7.7	0.7272
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10018175 [exp]	16.8	0.6832
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	17.0	0.7136
					Lus10019128 [exp]	20.9	0.6902
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	22.2	0.6929
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	31.4	0.6745
AT1G06450			Polynucleotidyl transferase, r...		Lus10017895 [exp]	31.5	0.6597
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	35.8	0.6671
					Lus10014515 [exp]	36.2	0.6874
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	38.7	0.6520

Compare expression of checked genes

Lus10037913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.