Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 149 / 2e-40 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 112 / 5e-27 Transmembrane amino acid transporter family protein (.1) AT1G71680 67 / 8e-12 Transmembrane amino acid transporter family protein (.1) AT2G36590 66 / 1e-11 ATPROT3, ProT3 proline transporter 3 (.1) AT1G24400 64 / 7e-11 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT3G55740 61 / 6e-10 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G67640 61 / 6e-10 Transmembrane amino acid transporter family protein (.1) AT2G39890 60 / 1e-09 ATPROT1, ProT1 proline transporter 1 (.1.2) AT1G48640 59 / 3e-09 Transmembrane amino acid transporter family protein (.1) AT5G40780 58 / 4e-09 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038640 [exp] 456 / 4e-160 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038639 [exp] 225 / 4e-69 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10001908 [exp] 179 / 8e-52 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 173 / 4e-49 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037913 [exp] 156 / 3e-43 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 125 / 1e-31 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10020537 [exp] 95 / 1e-20 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10041580 [exp] 69 / 2e-12 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10012443 [exp] 64 / 4e-11 AT1G10010 150 / 1e-41 amino acid permease 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 211 / 7e-64 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 205 / 2e-61 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 181 / 3e-52 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 123 / 5e-31 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 118 / 4e-29 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 89 / 5e-19 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G118000 [exp] 69 / 2e-12 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335200 [exp] 66 / 1e-11 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 64 / 5e-11 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.015G091600 [exp] 63 / 1e-10 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037914 pacid=23163661 polypeptide=Lus10037914 locus=Lus10037914.g ID=Lus10037914.BGIv1.0 annot-version=v1.0 ATGGAGACTAAGGTTCCAAACTCCATGACTGGTGCTACTGCAGCAAGCGACCAAGAAATTAATCAGCTTCCACCACCAAAAGAACTGGATGCCGGAGCCT TGTTTGTGCTGAAATCAGAAGGTTTTTCGTTTTTCCTCACCATGATTCCTTGTTCAGTTTTTGAAATTCTTGATGATGTTTTTGGTAGGATCGTGGGTGC ACTGTGGATATCACTTGACAACATCAATCGTAGCCCCGGCACTTCTGAGCCTACCCTTTGCTTTTTCTCTACTTGGGTGGACTGGTGGAGTGTTGTGCCT CACACTTGCAGCTATAGTGATCTTCTACTCATTCAATCTGCTGTCTTTAGTTCTAGAGCACCACGCACAGCATGGGAATCGACAGCTTCGATTTCGAGAC ATGGCAACGGACATCCTAGGTGTCGACCTAAATGGGGGAAGTACTTAGTTGGTCCCCTCCAAATTGGTGTATGTTATGGTTCTGTGGTTGCCAGCATTCT TCTTGGAGGGCAGAGCCTTAAGTTCATATATTTGCTGTACAGGCCGAATGGAGGGATGAAGCTGTACCATTTCATAAGCATATTTGGAGGCATGACAATG TTGTTGGCACAGATGCCGTCCTTCCACTCATTAAGACATATTAACCTGGTTTCTATCTTTCTTTGCCTTGCTTATAGCACTTGTGCCACTGCTGCTTCAA TCCATATTGGACACTCAAAGATGGCTCCAACTAGAGACTACTCTGTCAATGGTTCCCCAATAGACCAGCTTTTTGGCACCTTTGATGGTATCTCCATCAT TGCCACAGTGTACGCAAGCCTAGTCATTCCTGAGATCCAGGTGTACCTGCAGCCGACGAACGAAGTGTTGGAGAAATGGTTTGCGGACCCGAAAGAGAAA CAGTTCGCAGCGAGGAATGTGGTACCGAGGTTGTTGTTCCGGACGTTGGCTGTGATTGGAGCCACATTCTTGGCGGCGTTGCTGCCTTTCTTTGGTGACA TCATGGCCTTGTTCGGGGCTTTTGCTTGTATTCCTCTCAACTTCATACTGCCCGTGGTTTTCTACAACATCACCTTCAAACCGTCGAGAAACGGTGCAGT GTTGTGGATACACAGATCGATAGTGGTGGTTTCGTCGGTTTTGGTGGCAGTTGGTGCCGTTGCCTCTGTTCGACAAATCGTTCGTGATGCCAACACTTAC AGCTTGTTTGCTAACGTCTGA
AA sequence Show only first row Show all	>Lus10037914 pacid=23163661 polypeptide=Lus10037914 locus=Lus10037914.g ID=Lus10037914.BGIv1.0 annot-version=v1.0 METKVPNSMTGATAASDQEINQLPPPKELDAGALFVLKSEGFSFFLTMIPCSVFEILDDVFGRIVGALWISLDNINRSPGTSEPTLCFFSTWVDWWSVVP HTCSYSDLLLIQSAVFSSRAPRTAWESTASISRHGNGHPRCRPKWGKYLVGPLQIGVCYGSVVASILLGGQSLKFIYLLYRPNGGMKLYHFISIFGGMTM LLAQMPSFHSLRHINLVSIFLCLAYSTCATAASIHIGHSKMAPTRDYSVNGSPIDQLFGTFDGISIIATVYASLVIPEIQVYLQPTNEVLEKWFADPKEK QFAARNVVPRLLFRTLAVIGATFLAALLPFFGDIMALFGAFACIPLNFILPVVFYNITFKPSRNGAVLWIHRSIVVVSSVLVAVGAVASVRQIVRDANTY SLFANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037914 [exp]	0	1
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	6.9	0.8892
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	13.1	0.8965
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	14.0	0.8871
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	14.4	0.8937
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	17.0	0.8739
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	22.3	0.8910
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	25.6	0.8859
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	31.9	0.8799
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	33.8	0.8856
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	34.9	0.8844

Compare expression of checked genes

Lus10037914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.