Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10540 667 / 0 3-phosphoinositide-dependent protein kinase (.1) AT5G04510 656 / 0 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT4G09750 469 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G08730 180 / 6e-49 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G08720 179 / 9e-49 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT5G58140 177 / 8e-46 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT4G14350 167 / 7e-44 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G45780 167 / 1e-42 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G30640 163 / 2e-42 Protein kinase family protein (.1) AT3G23310 162 / 4e-42 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038647 [exp] 806 / 0 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10028834 [exp] 712 / 0 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10017448 [exp] 712 / 0 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10025213 [exp] 174 / 4e-45 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10011814 [exp] 169 / 1e-44 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 169 / 1e-44 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10026572 [exp] 173 / 2e-44 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036653 [exp] 170 / 3e-44 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 168 / 5e-44 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028800 [exp] 664 / 0 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 651 / 0 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.005G197700 [exp] 486 / 1e-166 AT4G09750 535 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G342000 [exp] 180 / 1e-46 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.012G073700 [exp] 172 / 3e-46 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 171 / 1e-45 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 170 / 3e-45 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.004G209700 [exp] 174 / 9e-45 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.008G167800 [exp] 165 / 4e-43 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 161 / 1e-41 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037921 pacid=23163886 polypeptide=Lus10037921 locus=Lus10037921.g ID=Lus10037921.BGIv1.0 annot-version=v1.0 ATGTTGGCAATGGAGAAGGATTTTGATTCAAAGCTAAGAATGCAGGGCGGCGACAACTCTTCTGTTACTGCAACCTCCTCTTCTTCCTCTACCGCTACTT CGGCTGCTGCTATAAGCAACGGGAATCCACCAAAATGTAAGAGTTTCGCGTTTAGGGCACCCCAGGAAAATTTCTCCATTCAGGATTTTGAGCTCGGCAA GATCTATGGCGTTGGTTCGTACTCAAAGGTTGGGGAGTTTCCTTTTCTCCAAATCATTGTTTTCTTTCCTTCTTCCTCTGCTGGTTTGTTTGTTTACTCT ATGCTTAAGGAATTTTTGTTGGCAAAACAGCATTACATCAATGCCTTCCCGTCTTATGGAATGAGTGTTTATTACGAATTTCAGCCTTCTTGGCAACATG GAATTTGGTATTTGCATCCAATGGTGGTAAGAGCTAAAAAGAAGGATAGTGGAATTGTATATGCGTTGAAGATCATGGACAAAAAGTTCATCACAAAGGA AAATAAACCAGCTTATGTGAAGTTGGAAAGAATCGTGCTTGATCAATTGGATCATCCAGGAGTTGTTCACCTGTATTTTACTTTCCAAGATACATTTTCC TTGTATATGGCACTTGAGTCTTGCGAAGGTGGAGAGCTTTTCGACCAAATAACTAGGAAACGCCGTTTGTCAGAGGAAGAAGCTCGATTTTATGCTGCTG AAGTTGTAGATGCCCTTGAATACATACATAAGATGGGGTTGATTCACCGAGATATCAAGCCGGAGAACTTGCTTCTTACAGGAGATGGACATATAAAAAT TGCCGATTTTGGAAGTGTGAAGCCAATGCAGGATAGCCGCATTACTGTGCTGCCGAATGCAGCTTCTGATGATAAAGCTTGCACATTTGTTGGTACGGCT GCATATGTACCTCCAGAAGTCCTCAACTCTTCTCCTGCAACCTTTGGAAATGACCTATGGGCACTTGGATGCACAGTGTACCAGATGCTTTCAGGGACAT CTCCATTCAAAGATGCAAGTGAATGGCTTATATTTCAAAAGATTATAGCCAGGGATGTACGCTTTCCTGATTATTTTTCGAAAGAAGCCAAAGATCTCAT AGATAGGTTGCTGGACACTGATCCTGGACGAAGACCGGGTGCTGGTCCTGATGGTTATGAAGCATTGAAGTTGCATCCTTTCTTTAAAGGGGTTGATTGG AACAATTTAAGATCACAAACCCCTCCGGAACTTGCTGCTGACCCTACGGCACAGTCAGGTGACGGAGTTGAGCCGGATTCATGGAATCCTGCACATGTTG GGAACGTTCATGCTCTATCATCTACTGAAGGATCTATAACACGTCTTGCCTCGATTGACTCATTCGATTCTAGATGGCAACAGTTTTTGGATCATGGGGA ATCCGTAATCATGATCTCCATGGTGAAGAAGTTACAGAAGTTGACCAGCAAGAAGGTGCAGCTTATCCTGACCAACAAACCGAAGCTGATTTATGTTGAC CCCTCGAAGCTGGTGGTAAAGGGCAATATCATCTGGTCTGACAATTCAGACGACCTCAGTGTCCAAGTAACCAGCCCTTCGAATTTCAAGATCTGTACGA CATGGAGGCAAACAGCTTTTGGTGTTTATGGGTACATGAACTTCACCAAGTCCGCGTTTCTGGAACACTCAAAGCAGTTCAATCCAGTGGATATGGAAAA GAGAATAGATGGGAAGAATTGTGTTGTAACAGGAGCGAATTCTGGGATTGGTTATGCCGCTGCTGAAGGGCTTGCTTCATGTGGGGCGACTGTGTATATG GTTTGTCGAAGCAAGGAGAGAGGTGAAGCTGCACTTTCTGAAATCCGGTCTACCACTGGAAACCAAAATGTTCATTTGGAGGTAAACAATGCTGGTCTGC TGGAGAACAACAGAATCACAACATCCGAAGGATTTGAGCTCAATTTTGCTGTGAATGTGTTGGGTACTTACACCATGACTGAACTTATGCGTCCTTTGTT GGAGAAAGCTGCACCTGATGCAAGGGTCATAACAGTTTCCTCTGGCGGGATGTACACAACTCCCTTGACTACCGACGTACAGTATACAAATGGGAACTTT GACGGAGTAGTACAGTATGCTCGAAACAAGCGAATTCAGGTAGCATTGACAGAAAAGTGGGGCGACATGTACAAGGACAGAGGAATATCATTCTACTCTA TGCATCCAGGGTGGGCTGAGACCCCTGGAGTAGCCAAGAGTTTGCCTAGTTTTAACGAAAGGTTCGCGGGGAAGCTAAGAAGTAAGGAGGAAGGCGCAGA CACAATAATCTGGTTAGCTTTACAGCCAAAAGAAAAGCTAACTACTGGTGCATTTTATTTTGACAGAGCTGAAGCTCCTAAGCATCTGGCACTGGCTGCA ACTCGTGGCTCTCACGCATTGATTGGTTACGTCGTTGACACTCTGCAATCGTTGGCAAAACTTCCTTGA
AA sequence Show only first row Show all	>Lus10037921 pacid=23163886 polypeptide=Lus10037921 locus=Lus10037921.g ID=Lus10037921.BGIv1.0 annot-version=v1.0 MLAMEKDFDSKLRMQGGDNSSVTATSSSSSTATSAAAISNGNPPKCKSFAFRAPQENFSIQDFELGKIYGVGSYSKVGEFPFLQIIVFFPSSSAGLFVYS MLKEFLLAKQHYINAFPSYGMSVYYEFQPSWQHGIWYLHPMVVRAKKKDSGIVYALKIMDKKFITKENKPAYVKLERIVLDQLDHPGVVHLYFTFQDTFS LYMALESCEGGELFDQITRKRRLSEEEARFYAAEVVDALEYIHKMGLIHRDIKPENLLLTGDGHIKIADFGSVKPMQDSRITVLPNAASDDKACTFVGTA AYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIIARDVRFPDYFSKEAKDLIDRLLDTDPGRRPGAGPDGYEALKLHPFFKGVDW NNLRSQTPPELAADPTAQSGDGVEPDSWNPAHVGNVHALSSTEGSITRLASIDSFDSRWQQFLDHGESVIMISMVKKLQKLTSKKVQLILTNKPKLIYVD PSKLVVKGNIIWSDNSDDLSVQVTSPSNFKICTTWRQTAFGVYGYMNFTKSAFLEHSKQFNPVDMEKRIDGKNCVVTGANSGIGYAAAEGLASCGATVYM VCRSKERGEAALSEIRSTTGNQNVHLEVNNAGLLENNRITTSEGFELNFAVNVLGTYTMTELMRPLLEKAAPDARVITVSSGGMYTTPLTTDVQYTNGNF DGVVQYARNKRIQVALTEKWGDMYKDRGISFYSMHPGWAETPGVAKSLPSFNERFAGKLRSKEEGADTIIWLALQPKEKLTTGAFYFDRAEAPKHLALAA TRGSHALIGYVVDTLQSLAKLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	0	1
AT1G53250			unknown protein		Lus10028136 [exp]	2.2	0.9244
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	4.0	0.8851
AT2G05310			unknown protein		Lus10001175 [exp]	6.2	0.9149
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	7.3	0.8890
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	8.1	0.9091
AT5G27290			unknown protein		Lus10018966 [exp]	11.1	0.8973
AT3G51300		ATRAC11, ROP1, ...	ARABIDOPSIS THALIANA RHO-RELAT...		Lus10014258 [exp]	14.6	0.8559
AT3G46630			Protein of unknown function (D...		Lus10018738 [exp]	14.7	0.8774
AT2G33180			unknown protein		Lus10011764 [exp]	15.2	0.8442
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10009594 [exp]	20.1	0.8313

Compare expression of checked genes

Lus10037921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.