Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 516 / 3e-178 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 499 / 4e-171 SKS3 SKU5 similar 3 (.1) AT4G22010 488 / 6e-168 SKS4 SKU5 similar 4 (.1) AT5G51480 485 / 4e-166 SKS2 SKU5 similar 2 (.1) AT1G76160 480 / 6e-165 SKS5 SKU5 similar 5 (.1) AT4G25240 479 / 5e-164 SKS1 SKU5 similar 1 (.1) AT1G21850 475 / 1e-162 SKS8 SKU5 similar 8 (.1) AT1G75790 472 / 8e-162 SKS18 SKU5 similar 18 (.1) AT5G66920 469 / 1e-160 SKS17 SKU5 similar 17 (.1) AT1G21860 466 / 3e-159 SKS7 SKU5 similar 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023539 [exp] 712 / 0 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10040424 [exp] 669 / 0 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10032241 [exp] 517 / 9e-179 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 503 / 6e-173 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 499 / 1e-171 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 493 / 1e-169 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 491 / 8e-169 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10025860 [exp] 488 / 3e-167 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10031722 [exp] 486 / 6e-167 AT4G25240 897 / 0.0 SKU5 similar 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032100 [exp] 823 / 0 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.008G032200 [exp] 738 / 0 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.003G112700 [exp] 523 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 520 / 7e-180 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 506 / 3e-174 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 502 / 1e-172 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.004G180500 [exp] 494 / 3e-170 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G021000 [exp] 493 / 4e-170 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.014G177700 [exp] 490 / 5e-168 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.005G247700 [exp] 488 / 5e-168 AT1G76160 878 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10037941 pacid=23163715 polypeptide=Lus10037941 locus=Lus10037941.g ID=Lus10037941.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTGAGCTTGCATGGGAGCCTTGTGGTGATTCTGGCAATTGTAGCCGCAGGTGTGGATGCTGCAGACATCTTCTTGACATGGAATGTTGCAC TTGACACCAGCCTCAATCCCATCACTGTCCAACAACCTGTTATTACAATCAACGGTATGTTTCCTGGACCAACAATCAACGCTACCACGAATGACTTAGT GAGTATCAACGTTTTCAACAACTTGGATGAGCCATTGCTGTTTACCTGGAATGGGTTACAGCAGAGGCTCAACTCCTGGCAAGATGGAGTTTCAGGAACA AACTGTCCAATCCAGCCTGGTTCAAACTGGACTTACCAATTTCAAACCAAGGATCAGATTGGGACCTTCTTCTACTTCCCATCACTCAACTTCCACAAGG CTGCTGGTGGATTCGGGGCAATTCGGGTCAATAATCGAGCAGTCATTTCTGTTCCTTTCGACAGGCCTGACAATGAGTTTGACCTTCTCATTGGTGATTG GTTCTACGATAACTACCAGATGATAAGATCAATGATGGACACAGAAGTAGTAGCCTATGAGGCCCTTCCTGACATTATACTGATGAATGGCAAAGGCCCT TATGAACACAAGCTGACCAAAGACTATGAATCCTTCACTGTCACATCAGGGAAGACTTACAGATTCAGGATATCGAATGTTGGAACTGCACTGAGTTTCA ATTTCAGGATTCAGAACCACCAAATGGTGGTGGTGGAGACAGAAGGGTCGTACACCAACCAGATCACTCTCGATTCGCTCGATGTCCATGTTGGCCAATC GTACTCAGTCCTGGTGACGATGAACCACAACGAAGCGGACTATTACATGGTGGCAAGTCCGAAACTCATTAACGTGAGTGAATCCAACAACAGTAGCCTT ATGGGAGTTGGAGTGCTACATTACTCAAACTCTGCGGGAAACATCTCAGGGCCTTTGCCCTCAGGGCCCGATTCATTCGATCTAGACTTCTCAATCAATC AGGCTAAATCCATCAGGTGGAACCTGACAACAGGGGCAGCAAGGCCTAACGCACAAGGAACATTCAACGTGAACAACATCACAATATCTCAAACCTTCAT CCTGGAAGCTTCAGCATCTGGAATCGAAGGTGATCCGCGATACTCGATCAACAATGTCTCCTACACCACCCCTGACACGCCACTGAAGCTAGCAGATCGA TTCGACAACGGGTCAGGAGTGTACCAACTAGACTGGTTCCCAACAAACTCTGTGAACCAGCAAGCTGCACACGGAGTCTCCGTCGTTAGCGGGACCCACA AAGGATGGATCGAGCTCGTCTTCCTCAATGCCATGAACGGATTCATGGATTCATGGCACCTGAACGGTTTCGGATTCTACGTTGTCGGGCTTGGGAATGG GGAGTGGAGCGCTGATGCAAGAAGCGGGTACAACTTACAGGACCCAGTGGTGAGATCGACGGTTCAAGTTTATCCAGGGGGATGGACAGCTGTTTATGCG TTCCTGGACAATCCGGGAATGTGGAACCTGAGGTCGCAAAACCTGAAGAATTGGTACTTGGGTCAGGAAATGTACATTCGAGTGCACGATGATGATCCAA ATCCTGCCAAGGAACGCCCCCCACCTGCTAATATACTTCTCTGTGGTAAATACGGAAGCAGTGTTGGGTCACAAAGTCCAGTTCAGTCCCCTGCTCCTTC CCCATTTCGAAGATAG
AA sequence Show only first row Show all	>Lus10037941 pacid=23163715 polypeptide=Lus10037941 locus=Lus10037941.g ID=Lus10037941.BGIv1.0 annot-version=v1.0 MASLSLHGSLVVILAIVAAGVDAADIFLTWNVALDTSLNPITVQQPVITINGMFPGPTINATTNDLVSINVFNNLDEPLLFTWNGLQQRLNSWQDGVSGT NCPIQPGSNWTYQFQTKDQIGTFFYFPSLNFHKAAGGFGAIRVNNRAVISVPFDRPDNEFDLLIGDWFYDNYQMIRSMMDTEVVAYEALPDIILMNGKGP YEHKLTKDYESFTVTSGKTYRFRISNVGTALSFNFRIQNHQMVVVETEGSYTNQITLDSLDVHVGQSYSVLVTMNHNEADYYMVASPKLINVSESNNSSL MGVGVLHYSNSAGNISGPLPSGPDSFDLDFSINQAKSIRWNLTTGAARPNAQGTFNVNNITISQTFILEASASGIEGDPRYSINNVSYTTPDTPLKLADR FDNGSGVYQLDWFPTNSVNQQAAHGVSVVSGTHKGWIELVFLNAMNGFMDSWHLNGFGFYVVGLGNGEWSADARSGYNLQDPVVRSTVQVYPGGWTAVYA FLDNPGMWNLRSQNLKNWYLGQEMYIRVHDDDPNPAKERPPPANILLCGKYGSSVGSQSPVQSPAPSPFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	0	1
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	4.5	0.8051
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	4.9	0.7980
AT3G19950			RING/U-box superfamily protein...		Lus10032265 [exp]	6.0	0.7544
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	7.1	0.8132
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	7.7	0.7704
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	15.2	0.8042
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10006824 [exp]	20.1	0.7913
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	20.7	0.7527
					Lus10024757 [exp]	24.8	0.7689
					Lus10014474 [exp]	25.7	0.7450

Compare expression of checked genes

Lus10037941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.