Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39130 495 / 5e-172 Transmembrane amino acid transporter family protein (.1) AT3G54830 348 / 1e-114 Transmembrane amino acid transporter family protein (.1) AT5G02170 236 / 2e-72 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 219 / 7e-65 Transmembrane amino acid transporter family protein (.1) AT3G09340 217 / 1e-64 Transmembrane amino acid transporter family protein (.1) AT3G09330 211 / 2e-62 Transmembrane amino acid transporter family protein (.1) AT2G41190 192 / 6e-55 Transmembrane amino acid transporter family protein (.1) AT5G15240 171 / 3e-49 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 135 / 5e-35 Transmembrane amino acid transporter family protein (.1) AT5G16740 109 / 7e-26 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038702 [exp] 578 / 0 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 399 / 4e-134 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10024374 [exp] 230 / 3e-69 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 207 / 8e-60 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10010457 [exp] 190 / 4e-52 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10003817 [exp] 184 / 2e-51 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 155 / 3e-42 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 155 / 4e-42 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 138 / 7e-36 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226000 [exp] 402 / 1e-135 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 398 / 5e-134 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 229 / 9e-69 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 184 / 4e-53 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 163 / 3e-45 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 161 / 2e-44 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 146 / 5e-39 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 146 / 8e-39 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 125 / 8e-32 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 111 / 2e-26 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037974 pacid=23163814 polypeptide=Lus10037974 locus=Lus10037974.g ID=Lus10037974.BGIv1.0 annot-version=v1.0 ATGAAGAATTCGGCGTCGGACCAAAGTTTCTACATTGACAGCGACGAAGAAGAATACAGGGACTTCAATCGAGATGAGGAAGGGGAAGATGACGCCGGTA ACCCGTCTGATTCCGACGAGTCCATGCCTGATAACCGCAACCAGAGCAAACCCGGTTCTTACATCACTTCATGGCCCCAAAGTTACAGGCAGTCCATTTA TCTATACAGCAGTGTGCCATCTCCTGGGATTAATTTCCTAAACACACCGTCTCTAACAAGATTAGGAAGCTCGTTCCTGACTTCTTCACTGGTAAGAAGA CACACACCGGAATCATTGCCCACAGCAACAGCACCATTGTTGCAGAAAGAAGATGATCAGAAGAAAAGCTCCCAGGCACTTCTCCCACCGATCCCACGGC GAAGATCCTCCATCAGGAAAGATGATAAGCCTTCTTCCATGATCGGCCATGAACTCCCCATCTCTCGTCAAAGCTCCTTTGGACAAGCCGTGATAAATGG ATTGAATGTGCTGTGTGGGGTTGGGATACTGTCGACGCCATATGCAGCCAAGGAAGGAGGATGGGCTGGTTTGTCAATTCTGATAATATTTGGTGTCCTC TCTTTCTACACTGGCTTGCTCTTGCGTTACTGCCTCGACAGTGAGCCTGGTCTTGAGACTTACCCTGATATTGGTCATGCTGCTTTTGGTACGCCTGGCC GGATTGCCATTTCAATCATATTATACGTGGAGCTCTACGCTTGCTGCGTTGAGTACATCATACTAGAGAGTGACAATTTGTCGTCACTGTTTCCAAATGC ACACTTGAGCTTGTTTGGGATGTACTTGGATGCCCACCACTTTTTTGCTTTTGTGACGACTCTTGCTGTTCTTCCTACAGTCTGGCTCACAGACCTCCGC GTTCTAAGCTACATCTCAGCAGTTATGGGGGATTCTATGTTTGGAGGAGCTACAGAACAGCAGTTAAAAGAATCTCAGTTCACTCTCAACATGCCTACGG ATCTTGTTGCCTCTAAGATTGCTGTGTGGACCACTGTGGTCAATCCATTCACCAAATATCCTTTCTGTTTGATCACGTATGCATTGACGATGATGCCAGT GGCACTGTGTCTGGAGGAGTTGATGCCAGCAAACATGAACAAGAACAAGTCATATATCTATGGGAAGGGGATTAGGACATTGCTGGTTCTATCGACATTG GTCGTTGGTCTCTCAGTTCCCTTCTTCGGACTGGTGATGTCACTGATAGGATCATTGCTCACAATGTTTGTGACGTTGATACTTCCTTGTGCTTGCTTTT TGAGCATCCTGAGGAACAAAGTGAAGCCATATCAGGTTGCGTTATGTGTGTTGATAATTACAGTAGGGTTAGTGTCGTCAGCTTTTGGGACTTACTCTGC ATTGTCCAAAATCGTGGCAAATTTGAGCGACTAG
AA sequence Show only first row Show all	>Lus10037974 pacid=23163814 polypeptide=Lus10037974 locus=Lus10037974.g ID=Lus10037974.BGIv1.0 annot-version=v1.0 MKNSASDQSFYIDSDEEEYRDFNRDEEGEDDAGNPSDSDESMPDNRNQSKPGSYITSWPQSYRQSIYLYSSVPSPGINFLNTPSLTRLGSSFLTSSLVRR HTPESLPTATAPLLQKEDDQKKSSQALLPPIPRRRSSIRKDDKPSSMIGHELPISRQSSFGQAVINGLNVLCGVGILSTPYAAKEGGWAGLSILIIFGVL SFYTGLLLRYCLDSEPGLETYPDIGHAAFGTPGRIAISIILYVELYACCVEYIILESDNLSSLFPNAHLSLFGMYLDAHHFFAFVTTLAVLPTVWLTDLR VLSYISAVMGDSMFGGATEQQLKESQFTLNMPTDLVASKIAVWTTVVNPFTKYPFCLITYALTMMPVALCLEELMPANMNKNKSYIYGKGIRTLLVLSTL VVGLSVPFFGLVMSLIGSLLTMFVTLILPCACFLSILRNKVKPYQVALCVLIITVGLVSSAFGTYSALSKIVANLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	4.4	0.7673
AT4G03340			Core-2/I-branching beta-1,6-N-...		Lus10033714 [exp]	4.7	0.6819
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	4.9	0.7079
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	6.0	0.7147
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	8.9	0.7240
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	19.0	0.7279
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	20.0	0.6835
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	22.4	0.6772
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	25.0	0.7247
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	28.0	0.7091

Compare expression of checked genes

Lus10037974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.