Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 100 / 7e-26 AtENODL18 early nodulin-like protein 18 (.1) AT5G15350 45 / 6e-06 AtENODL17 early nodulin-like protein 17 (.1) AT3G20570 44 / 2e-05 AtENODL9 early nodulin-like protein 9 (.1) AT3G27200 42 / 6e-05 Cupredoxin superfamily protein (.1) AT5G26330 41 / 0.0002 Cupredoxin superfamily protein (.1) AT3G17675 40 / 0.0002 Cupredoxin superfamily protein (.1) AT2G31050 40 / 0.0005 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009231 [exp] 251 / 1e-83 AT1G08500 117 / 4e-31 early nodulin-like protein 18 (.1) Lus10036067 [exp] 97 / 4e-24 AT1G08500 221 / 1e-72 early nodulin-like protein 18 (.1) Lus10041570 [exp] 47 / 1e-06 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 45 / 1e-05 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 44 / 3e-05 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 43 / 6e-05 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 42 / 7e-05 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10020276 [exp] 42 / 0.0001 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10002618 [exp] 41 / 0.0001 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150600 [exp] 184 / 1e-58 AT1G08500 97 / 2e-24 early nodulin-like protein 18 (.1) Potri.014G072700 [exp] 166 / 2e-51 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.001G273000 [exp] 107 / 2e-28 AT1G08500 213 / 1e-69 early nodulin-like protein 18 (.1) Potri.009G067300 [exp] 99 / 2e-25 AT1G08500 207 / 2e-67 early nodulin-like protein 18 (.1) Potri.014G049600 [exp] 48 / 1e-06 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 47 / 2e-06 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 46 / 5e-06 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 45 / 6e-06 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.009G136200 [exp] 44 / 1e-05 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.016G015200 [exp] 44 / 1e-05 AT3G27200 73 / 1e-16 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10037998 pacid=23163771 polypeptide=Lus10037998 locus=Lus10037998.g ID=Lus10037998.BGIv1.0 annot-version=v1.0 ATGAAATCCGCCGCGATCCTTCAGATCGCGATCGCCGCTGCTTTCCTGATCGCATCCGCGGCGTCCCAGCCTCCTCTTCCAACAGGCTACAAGAACCACA CCGTCGGGGAGGATGCCGGCTGGTTCTTCAACTCCGCCACCAACACTCCCTCCGCCAACTACTCGTCTTGGGCATCCTCTCAGACCTTCAATTTGGGAGA CTCCCTCATATTCCCGACGAATTCGAACCAGACACTTATCCAGACCTTCAACGATTCCACATTCCGGAGCTGCTCGGTCGACAATTCTTCAGACGACGAT ACTTTCCAGTACTTGGGAGGGGCGCAGAACTACGGCGAGGCTTTGACCGTGGTGGTGCCGTTGACAATCGAAGGCCCCAACTACTACTTCTCCGATGCCA ACGACGGCGTCCAGTGCCAGAATGGACTGGAATTCGAGACCCAAGCTAACCGAGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTCCAAGAGCCTCATAATGTATCG GTGCACCTCATTATTGATTTTCGTAACTAA
AA sequence Show only first row Show all	>Lus10037998 pacid=23163771 polypeptide=Lus10037998 locus=Lus10037998.g ID=Lus10037998.BGIv1.0 annot-version=v1.0 MKSAAILQIAIAAAFLIASAASQPPLPTGYKNHTVGEDAGWFFNSATNTPSANYSSWASSQTFNLGDSLIFPTNSNQTLIQTFNDSTFRSCSVDNSSDDD TFQYLGGAQNYGEALTVVVPLTIEGPNYYFSDANDGVQCQNGLEFETQANRGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFQEPHNVS VHLIIDFRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	0	1
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	1.7	0.8764
AT2G35470			unknown protein		Lus10035375 [exp]	5.8	0.7759
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	7.0	0.8065
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	7.3	0.8208
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	8.1	0.8189
AT4G24330			Protein of unknown function (D...		Lus10019958 [exp]	9.0	0.7972
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	15.3	0.7836
AT5G36230			ARM repeat superfamily protein...		Lus10029666 [exp]	17.5	0.7662
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	17.9	0.7718
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	19.1	0.8068

Compare expression of checked genes

Lus10037998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.