Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45500 653 / 0 AAA-type ATPase family protein (.1.2) AT3G27120 315 / 7e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 255 / 1e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 253 / 2e-78 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 249 / 8e-78 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G19740 243 / 4e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 240 / 4e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 233 / 5e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 233 / 7e-67 AAA-type ATPase family protein (.1) AT5G53540 218 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009233 [exp] 907 / 0 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041563 [exp] 298 / 2e-93 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 260 / 4e-82 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012530 [exp] 256 / 7e-80 AT3G27120 582 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 255 / 6e-79 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 254 / 8e-79 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019537 [exp] 251 / 2e-78 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023310 [exp] 250 / 2e-76 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10004891 [exp] 244 / 1e-75 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071900 [exp] 720 / 0 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G331200 [exp] 308 / 7e-98 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 267 / 4e-85 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 257 / 3e-81 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G331300 [exp] 251 / 7e-79 AT3G27120 400 / 2e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022216 [exp] 251 / 1e-78 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 249 / 7e-78 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 249 / 7e-78 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 249 / 8e-78 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 246 / 2e-76 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [flax] [poplar] MIT MIT (microtubule interacting and transport) domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10038001 pacid=23163790 polypeptide=Lus10038001 locus=Lus10038001.g ID=Lus10038001.BGIv1.0 annot-version=v1.0 ATGAATTTCTGGAAAAACGTGATCGATTCTCTGTCCTCAGTCCTCTCACCTGAAAACTCAACTTCTCCTGAACGAAAACCTAGCAGCTCAGCGATCATGG AGTCCGTTGCTGGAGGAGCTTCCAACGAACGTTGTGCCTATAAGTTGAAAGGATACTACGATCTGGCCACAGAGGAGATCAACAAGGCCGTGAGGAACGA AGAATGGGGGTTGGTCGATGACGCGATCGTCCATTACAAGAACGCACAGCGGATACTGACGGAGGCTAGCTCCACGCCTGCGCCTTCTTATATCAGCTCC AGTGAACAAGAAAAGGTTAAATCTTACCGTCAGAAGATCTCAAATTGGCATTCTCAAGTTACTGAAAGATTGCAAGCTTTAGATCGACGCAGAGTTTTGC CTTCCGCATCATCTTCCAGACAAGATTTGCCAAAGAGGTCTACTGCGTCAACTAGAAACACTCCAGTAATCAGGAATCAAAGTCCCAGAGCTACTACCAA TGCAAAACCTGTTGGGGATTCTGGAAATAGTTATGAAGCAAAACTAGTTGAAATGATAAATACATCAATAGTGGATCGGAGTCCTTCAGTGAAATGGGAA GATGTTGCTGGTCTTGAGAAGGCGAAGCAAGCCCTAATGGAAATGGTTATTTTACCTACTAAAAGGAGAGACCTCTTCACTGGCCTTAGGAGACCAGCTA GAGGTTTACTTCTCTTTGGACCGCCTGGAAACGGTAAAACAATGCTTGCTAAGGCAGTTGCCTCAGAATCACAGGCAACATTTTTTAATGTTTCAGCCTC ATCCTTGACATCAAAATGGGTGGGAGAGGCTGAGAAGCTTGTTCGTACTCTATTTACAGTTGCTGTATCCAGACAACCCTCTGTTATTTTCATGGATGAA ATTGATAGTGTAATGTCAACTCGGAAGGCTGATGAGAATGATGCTAGCAGGAGGTTGAAATCTGAGTTTCTGATACAGTTTGACGGTGTAACATCTAATG CCAATGATTTAGTAATTGTGATCGGAGCTACAAATAAACCTCAGGAGTTGGATGACGCAGTTCTTAGGAGATTGGTTAAGAGAATATACATACCACTGCC AGATGAAAACGTTAGGAGGCTTCTTTTTAAGCATAAACTCAAAGGACAGGCTTTTTCCTTGCCTGGCAGAGACCTTGAGAGGCTAGTTAAAGCGACAGAA GGATACTCAGGAAGTGATCTACAAGCTCTATGTGAAGAAGCTGCGATGATGCCAATTAGAGAACTCGGTGCCAATATCCTCAACGTCAATGCCAACCAGG TGAGATCCCTAAGATACGAAGATTTTCAGACGGCAATGACGGTGATCAGACCCAGCTTGAGCAAAAGCAAGTGGCAAGAGCTTGAACGATGGAACGACGA GTTTGGCTCCGGTTGA
AA sequence Show only first row Show all	>Lus10038001 pacid=23163790 polypeptide=Lus10038001 locus=Lus10038001.g ID=Lus10038001.BGIv1.0 annot-version=v1.0 MNFWKNVIDSLSSVLSPENSTSPERKPSSSAIMESVAGGASNERCAYKLKGYYDLATEEINKAVRNEEWGLVDDAIVHYKNAQRILTEASSTPAPSYISS SEQEKVKSYRQKISNWHSQVTERLQALDRRRVLPSASSSRQDLPKRSTASTRNTPVIRNQSPRATTNAKPVGDSGNSYEAKLVEMINTSIVDRSPSVKWE DVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVRTLFTVAVSRQPSVIFMDE IDSVMSTRKADENDASRRLKSEFLIQFDGVTSNANDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRLLFKHKLKGQAFSLPGRDLERLVKATE GYSGSDLQALCEEAAMMPIRELGANILNVNANQVRSLRYEDFQTAMTVIRPSLSKSKWQELERWNDEFGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45500			AAA-type ATPase family protein...		Lus10038001 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	1.4	0.9197
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	3.7	0.9089
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10035014 [exp]	3.9	0.8474
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	5.9	0.8771
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	7.9	0.8650
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	8.1	0.8675
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	11.1	0.8839
AT3G52905			Polynucleotidyl transferase, r...		Lus10008532 [exp]	14.3	0.8516
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	15.3	0.8452
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	15.9	0.8820

Compare expression of checked genes

Lus10038001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.