Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01680 272 / 5e-88 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G57560 259 / 3e-83 MYB ATMYB50 myb domain protein 50 (.1) AT1G09540 258 / 2e-82 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G26660 253 / 3e-80 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 209 / 2e-63 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT3G12720 207 / 3e-63 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G02940 199 / 4e-60 MYB ATMYB107 myb domain protein 107 (.1) AT1G63910 200 / 5e-60 MYB AtMYB103 myb domain protein 103 (.1) AT3G61250 197 / 7e-60 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G16770 197 / 2e-59 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015608 [exp] 207 / 1e-62 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038395 [exp] 197 / 2e-59 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 196 / 2e-59 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10033003 [exp] 196 / 6e-58 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10018418 [exp] 193 / 2e-57 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10024669 [exp] 197 / 3e-57 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10030378 [exp] 191 / 4e-57 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 190 / 5e-57 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10033473 [exp] 187 / 2e-56 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111200 [exp] 317 / 6e-104 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.002G185900 [exp] 300 / 2e-97 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 277 / 1e-88 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.013G001000 [exp] 266 / 1e-84 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.012G084100 [exp] 251 / 1e-79 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 248 / 2e-78 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.010G004300 [exp] 240 / 2e-75 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.003G155700 [exp] 211 / 2e-64 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 207 / 4e-63 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.001G197000 [exp] 208 / 6e-63 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038022 pacid=23163663 polypeptide=Lus10038022 locus=Lus10038022.g ID=Lus10038022.BGIv1.0 annot-version=v1.0 ATGGGGAGACACTCCTGCTGCTATAAACAGAAGCTCAGAAAAGGCTTATGGTCCCCTGAAGAAGACGAGAAACTCCTCCGTCACATCACCAAGTTCGGCC ATGGCTGCTGGAGCTCTGTCCCCAAACAAGCCGGATTACAGAGGTGCGGAAAGAGTTGCAGGCTGAGATGGATAAATTACTTGCGCCCTGATTTGAAACG CGGTGCATTCTCCCAGCAGGAAGAGAATCTGATCATCGAGCTCCATGCTGTTCTTGGCAACAGGTGGTCTCAGATTGCGGCGCAGTTGCCGGGAAGGACG GACAACGAGATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAGCTCCGGCAGAGAGGGATTGATCCTGTTACTCATAAGCCTCTTTCCGAGGTGGATA TTGAAAACAAGAACATTAACAATTCCTCTTCTTCCCCCGGCGGTGCCGAAGGCGGCGGCGGAGGGGAGGAGAATTTTGTTTCCAGCGAGCTTAATTTGTT GAAACAGGAGAAATCCAACAATATGAAAGCTCTGTCTTCTGTCGGCGGCGGCGGGGGTTTAATGGGTGGTGGTGACGTCGACAAGGATTTTTTGCTGGAA AGGTTCGCGGCGGTGGGGAGTTGTCATCAGTCGCCGCCGCCAACGGATTTGGTTGGGCATTTGAATTTCCCTCTTCATCAATTGAATTACTCAGCCGCCA CGTCGGTGGCTGACGGCCGCCTCTCGACTAACTCAATCCCTTCACTCTGGTATTCCGGCGGCGGTGGAGGAGGAGGTGGGAAGCCTTTTGACATGAACTC CGATTTCTCGTCTCCGACGGCAGCCATCAGTATCCCTTCGTCCTTCCCATACAAGCCGGCTTCTGTTGGAGGTGGCGGCGGCGGCGACAACTCTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGGGGCCGCGGCGGCGGGGGGGGGGCCGCCGAGCA GCAACAACAGCAGCAGTGGGAGCAGCAGTTCGTTCTTCGACACTGCCGCCATTTTCTCGTGGGGGATTGGCGACTGTGGCACTTCGGAGAAGGGGATGGG TCCCGCCGGCGCCGGGGCGACAGCGTCAGCGGCACAGGATGACATCAAGTGGCCGGAGTATATGAATAACCCGCTGCTGATGAGCGCAAACCAAACCCAA TTGTACAGTAATAATAATGATATTAAGTCGGAATCCCATTTCCTGCCGGAAAGTTCATCCAGCGTGTGGATTCACGGAGGCGGCGACGGAGGGCAGCAGC AATTCTCCGATCTATCGTGTCCCAAGGATTTCCAGCGACTCTCGGCGGCGTATGGCCATATAAATTAA
AA sequence Show only first row Show all	>Lus10038022 pacid=23163663 polypeptide=Lus10038022 locus=Lus10038022.g ID=Lus10038022.BGIv1.0 annot-version=v1.0 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKFGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRT DNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVDIENKNINNSSSSPGGAEGGGGGEENFVSSELNLLKQEKSNNMKALSSVGGGGGLMGGGDVDKDFLLE RFAAVGSCHQSPPPTDLVGHLNFPLHQLNYSAATSVADGRLSTNSIPSLWYSGGGGGGGGKPFDMNSDFSSPTAAISIPSSFPYKPASVGGGGGGDNSXX XXXXXXXXXXXXXXXXXXXXXSGAAAAGGGPPSSNNSSSGSSSSFFDTAAIFSWGIGDCGTSEKGMGPAGAGATASAAQDDIKWPEYMNNPLLMSANQTQ LYSNNNDIKSESHFLPESSSSVWIHGGGDGGQQQFSDLSCPKDFQRLSAAYGHIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	2.4	0.7704
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	3.9	0.7352
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	10.2	0.7290
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	12.0	0.7505
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	12.6	0.7168
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	15.9	0.7185
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	18.9	0.6918
AT5G04270			DHHC-type zinc finger family p...		Lus10038701 [exp]	19.1	0.7325
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	25.5	0.6630
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	25.5	0.7051

Compare expression of checked genes

Lus10038022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.