Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 340 / 7e-119 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 310 / 8e-107 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 305 / 9e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 303 / 3e-104 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 297 / 5e-102 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 247 / 1e-81 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 217 / 6e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 215 / 5e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 210 / 4e-67 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 202 / 3e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009992 [exp] 514 / 0 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 264 / 2e-88 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 261 / 3e-87 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042181 [exp] 253 / 4e-84 AT2G47130 255 / 3e-85 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 249 / 2e-82 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 249 / 5e-82 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029438 [exp] 248 / 1e-81 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 234 / 9e-77 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 233 / 1e-76 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G115300 [exp] 421 / 7e-151 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 270 / 6e-91 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 265 / 2e-88 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 265 / 2e-88 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 259 / 6e-87 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 259 / 8e-87 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 258 / 9e-86 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065700 [exp] 255 / 4e-85 AT2G47140 248 / 1e-82 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065600 [exp] 252 / 4e-84 AT2G47140 258 / 1e-86 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 252 / 6e-84 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038057 pacid=23163897 polypeptide=Lus10038057 locus=Lus10038057.g ID=Lus10038057.BGIv1.0 annot-version=v1.0 ATGTCTACCAGAAGAAGGCTGGAGGGCAAAGTGGCGGTCATAACCGGCGCAGCCAGCGGCATTGGCGAGGAAGCCATGCGTCTCTTCGTCGAACATGGCG CATTCGTGGTGGCTGCCGACGTCCAGGACGATCTCGGCCACCTGGCAGTGGCTGCGGTGGGATCCGACCGGGCTACCTACCGGCGGTGCGATGTTCGAGA CGAGAAGCAGGTCGAAGAGACGGTCAACTACACGGTGGAGAGGTACGGGAAGCTGGATATCATGTTCAGCAATGCCGGCGTCATCGGTCCGTTGACCGGG TTTCTCAATATGGACCTGGATGAGTTCGACCGGACTATAGCTATCAACGTTCGGGGCGTGGCGGCCACGATCAAGCATGCCGCGCGTGCCATGGTGGCGC GGGGCGTGCCCGGAGGATCTATCATATGCACCTCAAGCGCTGCTTCGACACTAGGTGGGACAGGGCCCCACGCCTACACTGCATCGAAGCATGCGTTGGT GGGGCTGGTTAGGTCGGCTTGTGGGGAGCTGGGGGAGTATGGGATTAGAGTCAACTGCATTTCTCCGTTCGGGGTGGCTACCCCGCTTGCATGTGGAGCG TTCGGGCTGAAGCCCGATGAGGTTGAAGCCAACTGTTCTAAGCTGGCTAATTTGAAGGGAATTGTGCTGAAAGCGAGACACGTTGCTGAAACAGCGTTGT TTCTCGCGTCTGATGAGTCTGCTTACGTCAGCGGTCACAACCTAGCCGTTGACGGAGGGTTTACTGTGGTCAACCACAGTTTTCCGGTTGTGTAA
AA sequence Show only first row Show all	>Lus10038057 pacid=23163897 polypeptide=Lus10038057 locus=Lus10038057.g ID=Lus10038057.BGIv1.0 annot-version=v1.0 MSTRRRLEGKVAVITGAASGIGEEAMRLFVEHGAFVVAADVQDDLGHLAVAAVGSDRATYRRCDVRDEKQVEETVNYTVERYGKLDIMFSNAGVIGPLTG FLNMDLDEFDRTIAINVRGVAATIKHAARAMVARGVPGGSIICTSSAASTLGGTGPHAYTASKHALVGLVRSACGELGEYGIRVNCISPFGVATPLACGA FGLKPDEVEANCSKLANLKGIVLKARHVAETALFLASDESAYVSGHNLAVDGGFTVVNHSFPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	0	1
AT3G24750			unknown protein		Lus10038162 [exp]	2.2	0.9743
AT2G17080			Arabidopsis protein of unknown...		Lus10023963 [exp]	2.8	0.9593
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	3.5	0.9703
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	4.0	0.9655
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	5.8	0.9721
AT2G17080			Arabidopsis protein of unknown...		Lus10025126 [exp]	6.0	0.9641
AT2G02310		ATPP2-B6	phloem protein 2-B6 (.1)		Lus10003445 [exp]	7.1	0.9242
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	7.9	0.9579
AT3G24750			unknown protein		Lus10025939 [exp]	8.4	0.9631
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	9.8	0.9521

Compare expression of checked genes

Lus10038057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.