Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62270 1130 / 0 HCO3- transporter family (.1) AT2G47160 1106 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G06450 942 / 0 HCO3- transporter family (.1.2) AT1G15460 766 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 741 / 0 BOR5 HCO3- transporter family (.1) AT4G32510 697 / 0 HCO3- transporter family (.1) AT5G25430 694 / 0 HCO3- transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009995 [exp] 1457 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10032651 [exp] 1011 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 912 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Lus10008083 [exp] 746 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 742 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 692 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10043299 [exp] 588 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G191000 [exp] 1159 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 1143 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.008G100300 [exp] 1096 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 1055 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 1047 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.003G059700 [exp] 773 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 770 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 747 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 739 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 735 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10038060 pacid=23163705 polypeptide=Lus10038060 locus=Lus10038060.g ID=Lus10038060.BGIv1.0 annot-version=v1.0 ATGGAAGAGACATTCGTTCCCTTCCGAGGAATCAAGAATGATTTGAAAGGAAGGTTGCTCTGTTACAAGCAGGATTGGACCGGCGGCTTGAAAGCTGGTT TCAGGATTATAGCTCCGACGACTTACATATTCTTCGCTTCCGCAATTCCGGTCATCTCCTTCGGCGAACAACTTGAGAGAAACACTGACGGAGTTATAAC GGCGGTACAAACGTTGGCATCAACAGCATTATGCGGAATCATACATTCCATCATCGGCGGCCAACCGTTACTGATACTCGGAGTGGCTGAGCCGACAGTC ATCATGTACATATTCATGTTCAAATTCGCCAAGGAGCAACCCGAACTCGGCCGAAATTTGTTCCTTGCTTGGTCCGGATGGGTGTGCGTTTGGACCGCGC TATTGCTGTTCTCGATGGCAATTCTAGGAGCTTGTTCGATTATCAACCGGTTCACCCGTCTGGCCGGGGAATTATTTGGTCTACTCATCGCTATGCTTTT CATGCAACAAGCTATTAAAGGAATAGTAGACGAATTTCGCATTCCATTACGAGAAGATCCAAAAGCAGAGGAATTCGTGCCTTCTTGGAGGTTTGCTAAT GGGATGTTTGCTCTTGTTCTTTCCTTTGGCCTTCTTCTCACCGCATTGAAAAGTCGAAAGGCTAGGTCTTGGCGCTATGGCTCCGACCAGAGAGGAAGCT TTGAACAATCCATGGAAGAGACATTCGTTCCCTTCCGAGGAATCAAGAATGATTTGAAAGGAAGGTTGCTCTGTTACAAGCAGGATTGGACCGGCGGCTT GAAAGCTGGTTTCAGGATTATAGCTCCGACGACTTACATATTCTTCGCTTCCGCAATTCCGGTCATCTCCTTCGGCGAACAACTTGAGAGAAACACTGAC GGAGTTATAACGGCGGTACAAACGTTGGCATCAACAGCATTATGCGGAATCATACATTCCATCATCGGCGGCCAACCGTTACTGATACTCGGAGTGGCTG AGCCGACAGTCATCATGTACATATTCATGTTCAAATTCGCCAAGGAGCAACCCGAACTCGGCCGAAATTTGTTCCTTGCTTGGTCCGGATGGGTGTGCGT TTGGACCGCGCTATTGCTGTTCTCGATGGCAATTCTAGGAGCTTGTTCGATTATCAACCGGTTCACCCGTCTGGCCGGGGAATTATTTGGTCTACTCATC GCTATGCTTTTCATGCAACAAGCTATTAAAGGAATAGTAGACGAATTTCGCATTCCATTACGAGAAGATCCAAAAGCAGAGGAATTCGTGCCTTCTTGGA GGTTTGCTAATGGGATGTTTGCTCTTGTTCTTTCCTTTGGCCTTCTTCTCACCGCATTGAAAAGTCGAAAGGCTAGGTCTTGGCGCTATGGCTCCGGCTG GCTTAGGAGCTTGGTAGCAGATTATGGAGTGCCATTAATGGTTTTGGTATGGACAGCTGTTTCCTACATCCCAACCAATAGTGTTCCCAAAGGAATCCCT CGCCGTCTTTTTAGCCCTAACCCATGGTCCCCTGGTGCATATGATAATTGGACCGTTATCAAGGCAAGCTCACTTTATTCGTTTGATCCTGATGACATGA TGAACGTTCCTGTCGTGTACATAATCGGAGCATTCGTTCCTGCAACGATGATAGCCGTGCTATACTATTTTGACCATAGTGTGGCATCACAGCTTGCTCA ACAAAAAGAGTTCAACTTGAGGAAGCCATCTTCTTACCACTATGACTTGCTCCTTCTTGGTTTCTTGACATTGTTATGCGGTCTACTTGGAATTCCGCCT GCAAATGGGGTGATTCCACAATCTCCAATGCATACCAAGAGCTTGGCCACTCTCAAACAACAGTTGTTACGGAATCGGTTGGTCGCAACCGCTCGGAGGA GCATAAGGAAGAGTGCTAGCTTGGGGAGGCTATATGGGAATATGCAAGAAGCCTATCAAAACATGCAAACCCCATTGATCTACCAACAACCTTCACAAGG TCTGAAGGAGTTCAAAGAATCAACAATCCAGTTAGCTACTCACACGGGGCAGATCGATGCTCCGATAGACGAGACACTGTTTGATATAGAGAAGGAAATC GACGATCTCTTGCCCGTAGAAGTGAAGGAACAGAGGGTCAGTAACTTGCTTCAAGCAATCATGGTAGGAGGTTGCGTTGCGGCAATGCCATTGCTTAAGA GGATACCGACATCAGTGCTTTGGGGATACTTTGCCTTCATGGCCATTGAGAGTTTGCCCGGTAACCAATTTTGGGAGAGGATCCTGTTGCTCTTCACAGC ACCTAGCAGAAGATACAAGGTTCTTGAGGAGTATCATGCTACATTCGTCGAAACGGTGCCGTTCATGGGCATCGCGACGTTTACCGTCTTCCAAACTGCC TACCTACTCGTGTGCTTTGGTCTAACATGGGTTCCGGTGGCTGGAGTTATGTTCCCTCTCATGATCATGCTGTTGGTTCCAGTGAGACAGTACCTGTTGC CAAAGTTCTTCAAATCCGCACACCTTCAGGATTTGGATGCAGCTGAGTTTGAAGAGGCTCCAGCTTTGCCCTACAATCTTGCAACAGAGACAGAGCTAGG AGCAGGAGCAGAAAATGGAGGGGATGCAGGGGAGATATTTGACGAGGTGATAACTCGGAGCCGTGGAGAGTTCAGGCGAATAACTAATAGCCCCAAAATC AGTAGCTCAACAGCAACTCCGATCATGAATCATAGCCCACGTAGTAACAGATCAGTCACTCACAGCCCGCGCCTAACTATTAGTGAACTGAGAGGGGAAA GAAGTCCTAAATCCGGTGGCAGAGTCGCCGGTGGAGGAGGAGGAGGTGAGTCGGCGTCGTGGATGTCTAATTTGGGGAAGAGCCCTTCTGCTGCTTCTTC CTCTTCGCTGTATAAATAA
AA sequence Show only first row Show all	>Lus10038060 pacid=23163705 polypeptide=Lus10038060 locus=Lus10038060.g ID=Lus10038060.BGIv1.0 annot-version=v1.0 MEETFVPFRGIKNDLKGRLLCYKQDWTGGLKAGFRIIAPTTYIFFASAIPVISFGEQLERNTDGVITAVQTLASTALCGIIHSIIGGQPLLILGVAEPTV IMYIFMFKFAKEQPELGRNLFLAWSGWVCVWTALLLFSMAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGIVDEFRIPLREDPKAEEFVPSWRFAN GMFALVLSFGLLLTALKSRKARSWRYGSDQRGSFEQSMEETFVPFRGIKNDLKGRLLCYKQDWTGGLKAGFRIIAPTTYIFFASAIPVISFGEQLERNTD GVITAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYIFMFKFAKEQPELGRNLFLAWSGWVCVWTALLLFSMAILGACSIINRFTRLAGELFGLLI AMLFMQQAIKGIVDEFRIPLREDPKAEEFVPSWRFANGMFALVLSFGLLLTALKSRKARSWRYGSGWLRSLVADYGVPLMVLVWTAVSYIPTNSVPKGIP RRLFSPNPWSPGAYDNWTVIKASSLYSFDPDDMMNVPVVYIIGAFVPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLLCGLLGIPP ANGVIPQSPMHTKSLATLKQQLLRNRLVATARRSIRKSASLGRLYGNMQEAYQNMQTPLIYQQPSQGLKEFKESTIQLATHTGQIDAPIDETLFDIEKEI DDLLPVEVKEQRVSNLLQAIMVGGCVAAMPLLKRIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHATFVETVPFMGIATFTVFQTA YLLVCFGLTWVPVAGVMFPLMIMLLVPVRQYLLPKFFKSAHLQDLDAAEFEEAPALPYNLATETELGAGAENGGDAGEIFDEVITRSRGEFRRITNSPKI SSSTATPIMNHSPRSNRSVTHSPRLTISELRGERSPKSGGRVAGGGGGGESASWMSNLGKSPSAASSSSLYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62270			HCO3- transporter family (.1)		Lus10038060 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Lus10009995 [exp]	17.9	0.8310
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	25.8	0.8317
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	26.0	0.8346
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	29.9	0.8144
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	30.2	0.8167
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	36.5	0.8328
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10033567 [exp]	38.2	0.7996
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	42.1	0.8321
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10024608 [exp]	53.3	0.7691
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	53.7	0.8220

Compare expression of checked genes

Lus10038060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.