Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47190 221 / 2e-71 MYB AtMYB2 myb domain protein 2 (.1) AT1G48000 219 / 5e-71 MYB ATMYB112 myb domain protein 112 (.1) AT1G68320 209 / 2e-66 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G06490 209 / 4e-66 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT5G49620 208 / 6e-66 MYB ATMYB78 myb domain protein 78 (.1.2) AT1G25340 201 / 1e-63 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G27810 186 / 2e-58 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT3G01530 183 / 2e-57 MYB ATMYB57 myb domain protein 57 (.1) AT5G40350 180 / 4e-56 MYB ATMYB24 myb domain protein 24 (.1) AT3G24310 164 / 3e-49 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009996 [exp] 466 / 5e-168 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10037818 [exp] 230 / 3e-74 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 224 / 5e-73 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10034338 [exp] 209 / 4e-66 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10041435 [exp] 207 / 4e-65 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 189 / 3e-59 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10014557 [exp] 185 / 4e-58 AT5G40350 224 / 1e-74 myb domain protein 24 (.1) Lus10022259 [exp] 185 / 1e-57 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 183 / 2e-57 AT5G40350 221 / 2e-73 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101400 [exp] 230 / 2e-74 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 228 / 9e-74 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.002G191800 [exp] 226 / 3e-73 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.014G117000 [exp] 224 / 1e-72 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.008G122100 [exp] 211 / 5e-67 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.012G055600 [exp] 202 / 2e-63 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 199 / 4e-62 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.010G123000 [exp] 197 / 2e-61 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.017G071500 [exp] 179 / 2e-56 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 176 / 3e-55 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038062 pacid=23163820 polypeptide=Lus10038062 locus=Lus10038062.g ID=Lus10038062.BGIv1.0 annot-version=v1.0 ATGGACGGCAGCCTAGAAAACATTCACTTCATGATGAGCTATGATTGGAATCACTCCGACGAAGGCCGATCAACCGTGAAGAAAGGTCCGTGGACTGCCG AGGAAGACTCCATACTTGCTAACTACGTTTCCCTCCACGGTGAAGGCTACTGGAATGCTGCAGCTCGATCTTCAGGGTTGAAGAGAACGGGCAAAAGTTG TAGGCTGAGATGGATGAATTATTTGCGGCCGAATGTTAGACGAGGGAACATAACCCTCCAAGAACAGCTCGTGATTCTTCAGCTTCATTCTCGATGGGGC AACCGATGGTCGAAAATAGCGGAGCAATTGCCCGGAAGAACTGACAACGAGATAAAGAACTACTGGAGAACAAGAGTACAAAAGTTGGCAAAGCAACTAA ACTGCGAGGTTTCCAGCGAGCAGTTCAGGGACGCCATGCATTACGATTGGATCCCTCGCTTAATCGAGCGGATCCAATCGTCAACTACTCCAAAACTACC CCACATACATCAGCCTACTTCGTCTCCTTCGTTATATTCTCGTGATACCAATTTCAATAACTCCGTTGGATCCGCATCAACGGACAACAGTAATATTGAC GTTGTCGATCGAGATAATGTCGCCAACATGTCATCATCCCTTGAGTGGCAAGCTACAAGCTCGAACGGTGCTTCATCAGACTCGTTCGACAGCATGACAG GTTTGGATTTTGGGACCAGCAATTATGGTTGTGGCGGTGGGTGCTCGAATGCGGTGGCGGTGGAAGAGCAATCGCCGCCGTGGGAGATGTTGGACGATAG TATCTGGCTTGCCCTGGAAAATGATGGATTGTTGTAG
AA sequence Show only first row Show all	>Lus10038062 pacid=23163820 polypeptide=Lus10038062 locus=Lus10038062.g ID=Lus10038062.BGIv1.0 annot-version=v1.0 MDGSLENIHFMMSYDWNHSDEGRSTVKKGPWTAEEDSILANYVSLHGEGYWNAAARSSGLKRTGKSCRLRWMNYLRPNVRRGNITLQEQLVILQLHSRWG NRWSKIAEQLPGRTDNEIKNYWRTRVQKLAKQLNCEVSSEQFRDAMHYDWIPRLIERIQSSTTPKLPHIHQPTSSPSLYSRDTNFNNSVGSASTDNSNID VVDRDNVANMSSSLEWQATSSNGASSDSFDSMTGLDFGTSNYGCGGGCSNAVAVEEQSPPWEMLDDSIWLALENDGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	0	1
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	2.8	0.9589
					Lus10021406 [exp]	5.1	0.9360
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	5.7	0.9338
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	7.5	0.9278
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	7.7	0.9057
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	8.1	0.9036
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	9.5	0.9160
					Lus10021407 [exp]	9.7	0.9219
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	9.9	0.9158
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	10.6	0.9135

Compare expression of checked genes

Lus10038062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.