Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21960 150 / 2e-45 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G19210 142 / 1e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G74930 139 / 3e-41 AP2_ERF ORA47, ERF018 Integrase-type DNA-binding superfamily protein (.1) AT4G31060 113 / 3e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G21910 107 / 1e-28 AP2_ERF DREB26 dehydration response element-binding protein 26, Integrase-type DNA-binding superfamily protein (.1) AT5G67190 99 / 8e-26 AP2_ERF DEAR2 DREB and EAR motif protein 2 (.1) AT4G36900 99 / 2e-25 AP2_ERF DEAR4, RAP2.10 DREB AND EAR MOTIF PROTEIN 4, related to AP2 10 (.1) AT2G23340 97 / 4e-25 AP2_ERF DEAR3 DREB and EAR motif protein 3 (.1) AT3G50260 94 / 6e-24 AP2_ERF DEAR1, CEJ1, ATERF#011 DREB AND EAR MOTIF PROTEIN 1, cooperatively regulated by ethylene and jasmonate 1 (.1) AT4G06746 93 / 8e-24 AP2_ERF DEAR5, RAP2.9 DREB AND EAR MOTIF PROTEIN 5, related to AP2 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009798 [exp] 143 / 4e-43 AT1G19210 132 / 1e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10033420 [exp] 140 / 1e-41 AT1G19210 181 / 4e-58 Integrase-type DNA-binding superfamily protein (.1) Lus10034885 [exp] 132 / 3e-38 AT1G19210 172 / 2e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10009373 [exp] 100 / 2e-26 AT5G67190 164 / 3e-52 DREB and EAR motif protein 2 (.1) Lus10010043 [exp] 100 / 4e-26 AT2G23340 170 / 1e-54 DREB and EAR motif protein 3 (.1) Lus10018727 [exp] 94 / 7e-24 AT5G67190 162 / 1e-51 DREB and EAR motif protein 2 (.1) Lus10041044 [exp] 88 / 1e-21 AT1G71520 138 / 9e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10009468 [exp] 87 / 1e-21 AT1G22810 132 / 1e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10006179 [exp] 86 / 3e-21 AT1G71520 123 / 7e-37 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218200 [exp] 161 / 1e-49 AT1G19210 176 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Potri.018G047300 [exp] 155 / 1e-47 AT1G19210 169 / 1e-53 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138800 [exp] 139 / 5e-41 AT1G19210 189 / 3e-61 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138700 [exp] 134 / 2e-39 AT1G19210 174 / 1e-55 Integrase-type DNA-binding superfamily protein (.1) Potri.018G038100 [exp] 118 / 1e-33 AT5G21960 100 / 5e-27 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138900 [exp] 118 / 1e-33 AT5G21960 86 / 3e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.006G080300 [exp] 98 / 2e-25 AT4G31060 143 / 1e-43 Integrase-type DNA-binding superfamily protein (.1) Potri.014G025200 [exp] 97 / 2e-25 AT1G46768 160 / 3e-51 related to AP2 1 (.1) Potri.002G124000 [exp] 96 / 5e-25 AT1G46768 158 / 3e-50 related to AP2 1 (.1) Potri.007G046500 [exp] 96 / 1e-24 AT5G67190 149 / 7e-46 DREB and EAR motif protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10038082 pacid=23163658 polypeptide=Lus10038082 locus=Lus10038082.g ID=Lus10038082.BGIv1.0 annot-version=v1.0 ATGGCGGCTGATCAAAACCAACAGTCCAGGACTTACGGTTCTTCTTCGTCCAATATTACTGGAATAATGGAGCAGGAGCAGCAGGGGCAGGAGCAGGCGG TGAAATACAAGGGCGTACGGAAGCGGAAATGGGGGAAATGGGTTTCGGAGATAAGGCTACCAAACAGTCGTGAGAGGATATGGTTAGGTTCCTACGACTC CCCAGAAAAGGCTGCCCGTGCTTTCGACGCCGCTCTCTACTGCCTTCGGGGACCCGGCGCCCGCTTCAATTTCCCCGACAACCCGCCTGACATTGTCATT GACGGCGCCTTGCTTACCCCTCAAGATATCCAGCTCGTAGCTACCAGGTATGCCAACCAAATCAACACCACACATTCTGCACCTCATCATGTCCCTACAG AAGACGGTCAACAACAACAACAAGACCAAACATTATTGTTTTCGGCACGTGATGGAAATGATAAAGGCAATTGCTCGAATACGACATCCACAACAGATGA GGATATACCAGTAGGCCCCGCCGTCATTACTACTACCACAACAACCACTACTGCAGCTATTCATGAAACGCCAATTGATTGGTCGTTTTTAGGAATGTTG GATTCCCAGTCGCACCACCACCCACCGCAGACGCCGGGTGAAGTCTCCGCAGCGGCAGCAGCTGCCGCCGCCGCCTAG
AA sequence Show only first row Show all	>Lus10038082 pacid=23163658 polypeptide=Lus10038082 locus=Lus10038082.g ID=Lus10038082.BGIv1.0 annot-version=v1.0 MAADQNQQSRTYGSSSSNITGIMEQEQQGQEQAVKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGPGARFNFPDNPPDIVI DGALLTPQDIQLVATRYANQINTTHSAPHHVPTEDGQQQQQDQTLLFSARDGNDKGNCSNTTSTTDEDIPVGPAVITTTTTTTTAAIHETPIDWSFLGML DSQSHHHPPQTPGEVSAAAAAAAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	0	1
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	1.0	0.9619
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	3.0	0.9285
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	3.2	0.9404
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	6.3	0.9260
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	6.3	0.9097
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	6.5	0.9200
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	7.1	0.9248
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	8.2	0.8938
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	8.8	0.9229
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	9.0	0.9081

Compare expression of checked genes

Lus10038082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.